KEGG   Olea europaea var. sylvestris (wild olive): 111393222
Entry
111393222         CDS       T05244                                 
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like isoform X1
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
oeu  Olea europaea var. sylvestris (wild olive)
Pathway
oeu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oeu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111393222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oeu03041]
    111393222
   03009 Ribosome biogenesis [BR:oeu03009]
    111393222
Enzymes [BR:oeu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     111393222
Spliceosome [BR:oeu03041]
 Complex A
  U1 snRNP components
   U1 related factors
    111393222
 Complex B
    111393222
Ribosome biogenesis [BR:oeu03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    111393222
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SNF2-rel_dom SWI2_SNF2 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 111393222
NCBI-ProteinID: XP_022874428
Position
4:1601761..1613276
AA seq 561 aa
MSYVPPHLRNPTNTTAVLVNGTGDYCDTKQLNNSSGRVNSTLGNDINGHSWNPGNRTSGS
YISPRIVVVPDPVFPQWMPSERVICLKPEQIQEVRLRLNVDVTVSPDSLPAPAPIESFVD
MNLCTSIMKDIAFHGYTTPTSIQAQAMPVALSGWDLLGCAETGSGKTAAFTIPMIQHCLA
QPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRAG
VNIVVATPGRFIDHLQQGNSSLSRISFVVLDEADRMLDMGFELQIREVMRNLPEKHQTLL
FSATMPVEIEELAQEYLTNPVRVKVGKVSSPTANVSQILEKLPETEKIDRLLNMLVGEAA
QSERSGYDFPLTIVFVERKTRCDEVAEALIEQGLQAAALHGGRSQSEREAALHNFRHGPT
RILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMYL
VAQIKKAIVDVDCGNTLTIATGKTARRKEREALAAQKEARIAMSKVSVMGPTAMNVEDKY
RHMITSSIIRKEGSADDAWDD
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgtcgtatgtacctcctcacctgagaaatccaaccaacaccactgcagtgctagtaaac
ggcaccggcgattactgcgacacgaagcagctgaataactcttccggtagagtcaattct
acgctcgggaatgacattaatggtcactcgtggaatccgggcaatcggacatccggtagt
tacatttcacctcggattgttgttgtccccgacccggtttttcctcaatggatgccctcc
gaacgtgttatctgccttaaaccagagcagattcaggaggtccgcttaaggcttaatgtt
gatgttactgtttctccagactcacttcctgcacctgctcctattgaatcatttgttgat
atgaatttgtgcacgagcatcatgaaggatattgcatttcatggatataccactcctact
tccattcaggcccaagccatgccagtggctctaagtggatgggatttgttaggttgtgca
gaaactggtagtggcaaaactgctgcattcaccatacccatgatacagcattgcctggct
cagcctcctgttcggcgtggagatggacctctagcattagtattggctcctacgagagag
ctagcacaacaaatagagaaagaggttaaggccttcagtagatctttggattccttcaga
actgcaattgttgttggtggaacgaacatttctgagcagaggtctgagctgcgagcaggg
gtcaatatagtggttgctactcctggaagatttattgatcatctacaacaaggaaattct
tctctctccaggatttcatttgttgttttggatgaagctgataggatgcttgacatggga
tttgaacttcagataagagaggtgatgcgaaatcttccagaaaaacatcaaactctactg
tttagtgctaccatgcctgtggagattgaagagctagcacaggaatacttgacaaatcca
gttcgagtaaaggtgggaaaagtcagtagcccaactgcgaatgtatcccaaatattggag
aagttaccagaaactgagaagattgacaggcttctaaatatgcttgttggagaggctgcc
caatctgaaagaagcggctacgactttcccttgacaattgtattcgtagaacgaaagact
agatgtgatgaggtagcagaagcactgatagagcaaggtttgcaagcagctgcgcttcat
ggtggtcgtagccaaagtgagagagaggctgccctccataattttaggcatggtccaacc
aggatactcgttgccactgatgttgcatctcgtggattagatgtcactggtgttgctcat
gttattaacctagatcttccaaagaccatggaagattatgtacaccgaattggaaggact
ggacgtgcaggatcaacaggtcaagctacatcattttatactgatcgtgatatgtatttg
gtagcacagataaagaaagcaatagtggatgttgactgtggtaataccttgacaattgca
actggaaagactgctcgaaggaaggagagggaagctttagctgctcagaaggaagcaagg
attgcaatgtccaaggtctcagtgatgggacctactgcgatgaatgtggaggacaagtat
aggcacatgattacttcttcaataatcagaaaagagggttcagcagacgatgcttgggat
gactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (23)   

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