KEGG   Otolemur garnettii (small-eared galago): 100950599
Entry
100950599         CDS       T07855                                 
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
oga  Otolemur garnettii (small-eared galago)
Pathway
oga03008  Ribosome biogenesis in eukaryotes
oga03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oga00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100950599 (XRN1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100950599 (XRN1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oga03019]
    100950599 (XRN1)
   03009 Ribosome biogenesis [BR:oga03009]
    100950599 (XRN1)
   03016 Transfer RNA biogenesis [BR:oga03016]
    100950599 (XRN1)
   03036 Chromosome and associated proteins [BR:oga03036]
    100950599 (XRN1)
Messenger RNA biogenesis [BR:oga03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100950599 (XRN1)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     100950599 (XRN1)
Ribosome biogenesis [BR:oga03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    100950599 (XRN1)
Transfer RNA biogenesis [BR:oga03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    100950599 (XRN1)
Chromosome and associated proteins [BR:oga03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    100950599 (XRN1)
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 100950599
NCBI-ProteinID: XP_023368764
Ensembl: ENSOGAG00000000170
Position
Unknown
AA seq 1667 aa
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKAQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGPENSICWAALEKNKGEVVTSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLANQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQKRLLEAMEA
CNHSLKKEEKKRNQHSECLMCWYDGDTEFTYPSPWPEKFPAVERCCTRYKIISLDAWRVD
INKNKITKVDQKALYFCGFPTLKNIKHKFFLKKSGVQVFQQSSRGENMMLEILMNAESDE
LSIENVASSVLGKSVFVNWPHLEEARVVAVSDGETKFFLEEPPGTQKLYLGRTAPPSKVV
HLGDKEQSNWTKEVQGISEHYLRRKGIIINETSAVVYAQLLTGRKYQVNQNGDVRLEKQW
SKQVVPFVYQTVVQDIRAFDSRFSNIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVI
TEGRIRVVFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRG
SRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSY
ISKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKI
EEEVEKCKQRKNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPV
GLRGTIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGTRSET
GNQKLTAIVKPQPAVNHYSSNSPISSGHLGGLNHSPQSLFVPAHVPAKDDDEFCNIWQSL
QGSSKIQHFQSTIQEKGTVLPQEIRQVNQHHKSGFNDNNIKYQQRKHDPHRKFKEECKSP
KAECQSQKISNKQTNSGIENFLVSLNISKENEVQSSHHGESPSEEHLSPQSFAMKGTRML
KEILKIDGSDTVDHKKEIKQFGNEVTVSSNRRDDYRSSPQPKQNKKLASYVNKPHSVNEY
HNIQSMDNVCWPAPSQIPPISTPVTELSRICSLIGMPQPDFSFLRTPQTMTVCQVKLSNG
LLVHGPQCHSENEAKEKAALFALQQLGSLGVNFPLPPPVFTNYPSAISPRSITPVFPQTT
GWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVPGKPFHHALYSGTMPMAGGVPSAMH
TQFIPLQVTKKRVANKKNFENKEVQSSSQATPLQTSQLESSDVTKVIPQDNSSASLKSSQ
TAQAASSLQVETASQGRSVSQPKSTSSSSRRKSRKLAVNFGASKPSE
NT seq 5004 nt   +upstreamnt  +downstreamnt
atgggagtccccaagttttaccgatggatctcagagagatatccctgcctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctagatatgaatggaatcata
catcagtgttctcatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaagtg
ttttttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcaacgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcaatagagaagggagaa
actcttcctacagaggccagatttgattccaactgtattacaccaggaactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatctgaaaaagcaaaaccagatcatgatccaaataccagacac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcacgaggcacat
ttttctctcctaagagaagaagttcgatttggtggcaaaaaagcacaaagggtatgtgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagaatatattgactat
gagttttcagtactaaaggaaaagatcacatttaaatatgatattgaaagaataatagat
gattggattttaatgggatttcttgttggcaatgattttatccctcatctacctcatttg
catattaatcatgatgcactgcctcttctttatgggacatatattaccatcctaccagaa
cttgggggttacattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtaaaactatcagattttgatcgggagcacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcggcaggtgtcgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggcccggaaaattctatatgttgggct
gctttagaaaaaaataaaggtgaagtggtaacttctaaggataatttagaagatgagact
gaagatgatgacctgtttgaaactgagtttagacaatataaaagaacatattacatgacg
aagatgggagttgacgtagtatctgacgactttctggctaatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tatccttatcattatgcacctttcctgtccgatatccgcaacatcagtacactcaagata
cactttgaactaggaaaaccttttaagccttttgaacagcttcttgctgtgcttccagca
gctagcaaaaatttacttcctacatgctaccagaaacgattgttggaagccatggaggca
tgcaaccactccctcaaaaaggaagagaagaaaagaaatcaacatagtgaatgcctaatg
tgctggtatgatggagatacagagttcacctatccttctccatggccagaaaagttccct
gctgtagaacgatgttgtacaaggtacaaaataatatcattagatgcttggcgtgtggac
ataaacaagaacaaaataaccaaggttgaccaaaaggcattatatttctgcggatttcct
actctgaaaaacatcaaacacaaattttttttaaagaaaagtggtgttcaagtattccag
caaagcagtcgtggagaaaacatgatgttagaaatcttaatgaatgcagaatcagatgaa
cttagtatagaaaatgtagcttcatcagtgcttggaaaatctgtctttgttaattggcct
caccttgaagaagctagagttgtggctgtatcagatggagaaacaaagtttttcttggaa
gaacctccaggaacacagaagctttatttgggaagaactgctccaccatctaaagtggtc
caccttggagataaagaacaatctaactggacaaaagaagtacaaggaatttcagaacac
tacctaagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagtta
ctcacaggtcgtaaataccaagtaaatcaaaatggtgacgttcgtctagagaaacagtgg
tcaaaacaagttgttccttttgtttatcaaactgtagtccaggacatccgagcttttgac
tctcgtttctccaacatcaaaacattggatgatttgtttcctcctagaagtatggttttt
atgctgggaaccccctattatggctgcactggagaagttcaagattcaggtgatgtgatt
acagaaggtaggattcgtgtggttttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccaacataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aaaaaaaatgaagaggtacctggatatactaagaaagttggaagcgaatggatgtattca
tctgcagcagaacaacttcttgcagaatacttagagagagctccagaactatttagttat
atatccaaaaacagccaagaagatgttttctatgaagatgatatctggcctggagaaaat
gagaatggtgctgagaaagtacaagaaattattacttggctaaaaggacatcctgtcagt
actttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagttgaaaagtgcaagcaaagaaagaataataagaaggtacgagtaactgtg
aagcctcatttgctgtacagacctttagaacagcaacatggagtcattcctgatcgggat
gcagaatttcgtctcttcgatcgtgttgtaaatgtgagagagaacttctcagttccagtt
ggccttcggggcaccatcataggaattaaaggagctaatagagaagctgatgtactattt
gaagtattatttgatgaagaatttcctggaggcctaacaataagatgctcaccaggtaga
ggttatcgactaccaacaagtgccttggtgaacctttctcacgggactcgctctgaaact
ggaaatcagaagttgacagccattgtgaaaccacaaccagctgtgaatcactatagctca
aattcaccaatttcgtctggacatctgggaggcctcaaccattcccctcagtcacttttt
gttcctgctcatgtacctgctaaagatgatgatgaattttgcaacatttggcaatcctta
cagggatccagtaaaattcagcactttcagtcaactatacaagagaagggtacagttcta
cctcaagaaataagacaagtaaatcaacatcataaatctggctttaatgacaacaacatt
aaataccagcaaagaaaacatgaccctcacagaaaatttaaagaagaatgtaagagtcct
aaagctgaatgtcagtcacaaaaaatatctaataagcagactaactctggaattgagaac
tttttagtatccttgaatatctccaaagaaaatgaagtacagtcatctcatcatggagag
tctccaagtgaagagcatttatcgccacagtcatttgctatgaagggaacgcggatgctt
aaagaaattctaaaaattgatggctctgatactgtggaccacaaaaaggaaatcaaacaa
tttggtaatgaagtcactgtttcttctaatagaagagatgactatagatcatccccacag
cctaaacaaaataagaaattagcatcttatgtgaacaagcctcacagtgttaatgagtac
cataatattcaatccatggacaatgtgtgttggcctgctcccagccagatccctcctata
tccacaccagtcactgaactttctcgaatttgttcgcttattggaatgccacaaccagat
ttctcctttcttaggacaccacagacaatgactgtttgccaggtaaaattatctaatggc
ttactggtacatggaccacagtgccactctgaaaatgaagccaaggagaaagctgcactt
tttgctttacaacaattgggctcattaggagtgaatttccctttgcctccaccagtgttt
acaaattatccttctgccatatcacccagaagcattactccagttttcccccaaactact
ggctgggatcactatggaagcaacttagcattgggggcagctaatataatgccttcatcg
tctcatctctttggctccatgccatggggaccaccagtaccagttcctgggaagcccttc
catcatgcgttatattctgggaccatgcccatggctgggggagtgccaagtgctatgcac
actcagttcatacctctgcaggttactaaaaaaagggttgcaaacaaaaagaactttgag
aacaaggaggtccagagttcttctcaagccaccccacttcagactagccagctagagtct
tctgatgtcaccaaagtaattccacaggacaattcatcagcttccttaaagtcctctcag
actgcccaggctgcatcttctttacaagttgaaactgcttctcaaggccgtagtgtgtct
cagcctaagtcaacatcaagctcttcaagaagaaaatcaagaaaactggctgtcaatttt
ggcgcttctaaaccttctgaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system