KEGG   Oceanobacillus iheyensis: OB0609
Entry
OB0609            CDS       T00093                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
oih  Oceanobacillus iheyensis
Pathway
oih03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oih00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OB0609
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oih03019]
    OB0609
   03009 Ribosome biogenesis [BR:oih03009]
    OB0609
Enzymes [BR:oih01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OB0609
Messenger RNA biogenesis [BR:oih03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     OB0609
Ribosome biogenesis [BR:oih03009]
 Prokaryotic type
  rRNA helicases
   OB0609
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_RecD AAA_19
Other DBs
NCBI-ProteinID: BAC12565
JAMSTEC: OB0609
UniProt: Q8ESL7
Position
636000..637487
AA seq 495 aa
MTKFNELGVSAPIMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPL
INKINAKLRKVQGLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKDG
PQIVVATPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTLL
FSATMPKEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKYKFDTLNNHLDINSP
ELAIIFARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREMAHLNLIEQTTK
SKMKRMAPPTNQDARRGQQQVTIEKLKNAINEKDLKVYEDAAKELLDEYDSITVVSAAIS
MMTKERRDTPVRISSVAPISVKKAKNQKDNKTKGRSNNKRFYGGRGQGGRNQGGRGQGGR
NRKGKGNYQRRNRDN
NT seq 1488 nt   +upstreamnt  +downstreamnt
gtgacaaaatttaacgaactaggtgtttccgccccaataatgaaagctttagaaaaaatg
gggtttgaggaagctacaccaattcaagcggaaactattccacatgcactagaaggccat
gatgttattggccaagcacagacaggaacaggtaaaacagcagcattcggtattccgtta
atcaataaaattaatgcaaaactaagaaaggtgcaaggtttaattgttgcaccaacacgt
gaacttgctattcaagttgcagaagaaataaatcgtttagcgaaattcaagagtgttaga
gctcttgcaatatatggtggccaaccaatggaccgacagatccgagcactgaaagatggt
ccacagatcgtagtggctaccccgggtagattattagatcatatgcgcagaaaaacgatt
cgtattgatcaagtgcatacggccgttctagatgaagctgatgaaatgctaaacatgggc
tttattgatgatatacgtgagattctaaaagggattccagaagaaagacaaactctactt
ttctctgcgacaatgccaaaagaaatccgtaatatcgctactacgcttatgaaggaacca
aaagaagttaaagttaaagcgaaagaaatgaccgtagagaatattgatcagtatttcatt
gaaattcctgagaagtataaatttgatacactaaacaatcatttggatattaattcacca
gaacttgcgattatttttgctcgtacgaagaagcgtgtggatgaagtagctgaaggatta
caagcgagaggatatcgctcagaaggaatccacggtgatttaacacaaggaaaacgtatg
tctgtactgaagaaatttaagcaaggtcgtgtagatgtattagtcgctacagatgtggca
gcacgtggattagatatttctggtgtaactcatgtttataactttgatataccacaagat
ccagaaagttatgtacatcgtattggacgtacaggacgtgctggaaaaatgggtgaagca
atttctttcattaccccgagagaaatggctcatttaaatctaattgaacaaacgacaaag
agtaaaatgaagcgtatggcaccaccgacaaatcaagatgctcgtcgtggccaacagcaa
gtaactattgaaaagctaaagaatgcaattaatgagaaagacttaaaagtatacgaagat
gcagcgaaagaattattggatgagtatgattcaattactgttgtttcagctgctatcagc
atgatgacaaaagagcgtcgtgatactccagttcgtatttcttctgtcgcaccaatcagc
gtgaagaaagcgaaaaaccaaaaagataataaaactaaaggacgttctaataacaaacgt
ttctatggtggtcgtggacaaggtggacgaaaccaaggaggacgcggtcaaggcggtcgc
aaccgaaaaggaaaaggtaactaccaacgacgtaatagagataattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   JAMSTEC (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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