KEGG   Oncorhynchus kisutch (coho salmon): 109879094
Entry
109879094         CDS       T09179                                 
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109879094 (lsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109879094 (lsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109879094 (lsm3)
   03041 Spliceosome [BR:oki03041]
    109879094 (lsm3)
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109879094 (lsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109879094 (lsm3)
Spliceosome [BR:oki03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109879094 (lsm3)
 Complex C
  U2 snRNP components
    109879094 (lsm3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E YfkB Peptidase_M16_M DUF150_C
Other DBs
NCBI-GeneID: 109879094
NCBI-ProteinID: XP_020326867
Ensembl: ENSOKIG00005004219
Position
LG5:68872711..68875637
AA seq 102 aa
MADEVEQQTTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggatgaagttgaacagcaaacgaccaccaacacagtggaggagcccctggatctg
atcaggctcagtttggatgaaaggatatatgttaagatgagaaacgaccgagaactcagg
ggcagattgaacgcctacgatcagcacttgaacatgatcttgggagatgttgaggagacg
gtgacaacagtagagattgatgaggagacgtatgaagaaatttacaagtcaacgaagagg
aacatccccatgttgtttgtgagaggtgacggagtcgtcttggtcgctcctcctctcagg
gtgggctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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