KEGG   Oryzias latipes (Japanese medaka): 101155106
Entry
101155106         CDS       T02443                                 
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03022  Basal transcription factors
ola03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    101155106 (gtf2h1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101155106 (gtf2h1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ola03021]
    101155106 (gtf2h1)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101155106 (gtf2h1)
Transcription machinery [BR:ola03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     101155106 (gtf2h1)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     101155106 (gtf2h1)
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 101155106
NCBI-ProteinID: XP_004069633
UniProt: H2LNK6
Position
6:15753882..15759810
AA seq 550 aa
MASLSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHPYSDIRCQKISPDGK
AKVQLQLVLHTGESTTFHFANESTALKDREAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLGGLNNSEPAPYSNKQEVGISGAFLADIRPQTDG
CNGLRYNLTTDIIESIFRTYPAVKQKYSENVPHSLTEKEFWTRFFQSHYFHRDRINTGTQ
DIFSECAKQDEKGLMSLVNKGVKNPLVDLLSLEDKTLDEGYGIKQALPSTSNTNKTVKES
SNAAIIKRFNHHSAMVLAAGSRKNEVPADQASETSSTDGNSRDSDFFQPPVKKVKLQEAI
EYEDLQRESKRKTVALNLKKSDRYAHGPVPLQSQKYTTSQDIINAVNCIQHEMAHYKPNL
TQVMSSTAASSAIAALSPGGVLMQGGAQQAINQMVPSDIQGELKHLYVAAGELLRHFWSC
FPVNTSFLEDKVIKMKSNLERFQMTKLSPFKEKLQRQYLGTNLTGHLEEMLQTAYSKFHI
WQTRRMMRKT
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggcatctctgtcagaggaggtcttgctggtggtaaaaaaggttcgccagaggaagcag
gatggcacactttacctgatggctgaaagaatagcctggggtccagaaggcaaagaccgc
tttacagtcagtcacccgtactcagacatccgctgtcagaagatcagccctgatggcaaa
gccaaagttcagctccaattggtccttcatacaggcgagagcaccacattccactttgcc
aatgagagcactgcacttaaagacagagaagctgccaaggagctgctgcagcagctactg
cctaagttcaagaagaaagccaataaagaactggaggaaaaaaacagaatgcttcaagag
gatccagtgcttttccagctttacaaagaccttgttgtaagccaagtgatcagtgctgag
gagttctgggccaacagattagggggtctaaataactcagagcccgcaccctactccaac
aaacaggaagtgggcatatctggagcatttctggctgacattcgaccccagaccgatggc
tgtaatggtctgagatataatttgacaacagatatcattgaatccatcttcagaacatac
cctgcagtgaagcagaagtacagtgaaaatgtgccacatagcctcactgagaaggagttc
tggacacgctttttccagtcccattattttcatagagaccgcatcaacacaggaacacaa
gatatcttctcagaatgtgccaaacaagatgaaaaagggttaatgtctcttgtaaataaa
ggagtgaagaatcctttggttgacctgttgtcattggaggataaaaccttagatgagggt
tacggaataaaacaagcactgccctcaacttccaacacaaacaagacagtgaaggagagc
agcaatgctgccattataaagcggttcaaccatcacagtgccatggtcctggcagcaggc
tcacgcaagaatgaggtgcctgctgaccaagccagtgagacgagcagcacagatggaaac
tccagagattcggacttctttcagcctcctgtgaaaaaggttaaattgcaagaagccata
gaatatgaggatctacaaagggaaagcaaacggaaaacggttgcattaaaccttaagaag
tctgacaggtatgcccatggtcctgtcccactgcagtcccagaagtataccaccagccaa
gacatcattaatgcggtgaactgtatccagcatgagatggcccattacaaacccaatctt
actcaggtaatgtccagcactgcagcaagttctgctattgcagcgctttctccagggggt
gtcctcatgcaggggggagcacagcaagccataaatcagatggtcccttctgacattcaa
ggggagttgaaacatctttatgtagctgctggagagttgttgagacacttctggtcttgt
tttcctgtaaatacatcatttttagaggacaaggtgataaaaatgaagtcaaacctcgaa
agatttcagatgaccaagctgtctcctttcaaagagaagcttcagcgccagtatttaggt
acaaatctcactgggcacttggaggaaatgctgcagaccgcctacagcaagttccacatc
tggcaaactcgtcggatgatgaggaaaacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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