KEGG   Oryzias latipes (Japanese medaka): 101155586
Entry
101155586         CDS       T02443                                 
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101155586 (dhx38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ola03041]
    101155586 (dhx38)
Enzymes [BR:ola01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101155586 (dhx38)
Spliceosome [BR:ola03041]
 Complex C
  Other components
   Step II factors
    101155586 (dhx38)
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 T2SSE baeRF_family5 Adhesin_E AAA_16 Flavi_DEAD AAA_30 Sigma54_activ_2
Other DBs
NCBI-GeneID: 101155586
NCBI-ProteinID: XP_004067034
UniProt: H2LUQ9
Position
3:20527332..20546090
AA seq 1255 aa
MEEEDVSMHRLEGTSPEAQVGGLIVKKKSTAAEPHVFRAPTPRTSLLGLDLLAAQKRKER
ETKEQEQFNCDERDRKKSKISSYKDWEEGKSDSGSDEEDDEENKSAKKERKYRVTGSETP
SNPGGVSEEFRRRHQQREKDRREHGVYASSKEDKRRDKDRSRDGSRERRSERDEREHSHG
RGSSGSRSERGEHSERSERSQRDVWSERISRGSKRDEPSTPLQRPRDSFTPSHSNWDEDD
SGYNSVRHSQWESPSPFPSPRDSDRSERSHRSGRESERKDRSVRGRYTDDTPLPTPSYKY
NEWANDRKHLGSTPRLSQGKGRKEGAEGGIMFDKESEKEEWEEDQKQADRDWYMMDEGYD
EFHNPFTSTSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVD
EDFEEDNATKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLVRKH
REQKERKKAQHKHWELAGTKLGDIMGIKKTEEEEPGGKPVGEDGKVDYKADQKFADHMKE
KSEASSDFAKKKSLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHE
DGYTRYGMVGCTQPRRVAAMSVAKRVSEEIGSNLGEEVGYAIRFEDCTSESTMIKYMTDG
ILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRNDLKLIVTSATMDSDK
FAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQE
DIEVTSDQIVERLGELDNAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETS
LTVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQ
SAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILG
ALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGRE
EESDQVREKFSVPESDHLTYLNVYNQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDI
MVQQKMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMG
YTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGRSRQENRRRAKDEITN
MEEEMAMAQEQLRTRREEQEKKSNMNIVRAVKICTPGRKEEAPMTPRRTPARFGL
NT seq 3768 nt   +upstreamnt  +downstreamnt
atggaggaggaggatgtttccatgcataggctggaagggaccagtccagaagctcaggtt
ggcggtctgattgtaaagaaaaagagtactgctgcagaacctcatgtttttcgagcacct
acaccacgtacatctttgctgggcttggatctactggctgcccaaaagagaaaggagcgg
gagaccaaagaacaggaacaattcaactgcgatgaaagagacagaaagaagtcaaagatt
tcttcctacaaggactgggaagagggtaaaagtgactccggctctgatgaagaggacgac
gaagagaataaaagtgccaagaaagaacggaagtatcgagtgacggggtctgagacaccg
tccaaccctggaggagtcagtgaagagttcagacgcagacaccagcagagggagaaggac
aggcgagagcatggggtctatgcttcttccaaggaggacaagaggagagacaaagacagg
agcagagatggtagcagggagcgacggagtgaaagagatgagagggaacacagccacgga
cgtggtagcagcggcagtcgttcggaacgtggggaacacagcgaaaggagcgagcgctcg
cagagagatgtatggtcggagcgcatcagccgagggagtaaaagagatgaaccctccaca
ccgctgcaacgccccagagattctttcacaccttcccactccaactgggatgaggacgac
agtggttacaacagtgtgaggcattcccagtgggagtctccatctccttttccatctcca
agagattcagatcgctcagaaagaagccatcgctctggacgagaaagtgagaggaaggac
agatcagtcagaggtcgttacacagacgatacacctctcccaacaccgtcttacaagtac
aacgaatgggccaatgacagaaaacatttgggctcaacacctcgtttgtcgcaaggaaaa
ggccgcaaagaaggcgcagaaggaggaattatgtttgataaggagagcgagaaagaagag
tgggaagaggaccaaaagcaagctgaccgagattggtacatgatggatgaaggatatgat
gagttccacaatcccttcacctccacatctgaagaatatgtaaagaaaagagagcagatt
cttcagaaacagactcagaaaagaatatctgcccagaagcgacagatcaatgaggacaat
gaaaggtgggagacgaaccgtatgctgaccagtggtgtggtgcaaaggctggaagtggat
gaggactttgaggaggacaatgcaaccaaagttcatctgcttgttcataacctggttcct
cctttcctggatgggagaatagtcttcactaaacagccagagcctgtcattccggtgaag
gatgctacctctgatatggctatcatctctcgaaaaggcagccaacttgttcgtaaacat
cgggagcagaaggaacgcaagaaggcacaacacaaacattgggagctggcaggcaccaaa
ctgggtgacattatgggcatcaagaagacagaggaggaagagcctggtggcaaaccagta
ggggaagatggaaaagttgattacaaggcagatcagaaatttgcggaccacatgaaagag
aagtctgaggccagcagcgactttgccaagaaaaaaagtcttctggagcaaagacagtat
ctgcccatctttgctgtcaggcagcaactgctcaacattatcagggacaacagcatagtg
attgttgttggggaaacgggcagtgggaagaccacccagctaacacagtacctccatgaa
gatggttatactcgctacggcatggtgggctgcacgcagcctcggagagtggcagccatg
agtgtcgctaagagagtcagcgaagaaataggcagcaaccttggtgaagaggttggctat
gcaatccgctttgaggactgtacctcagagagcacaatgatcaagtatatgacggacgga
attttgctcagggagtctttaagggagtcagatctggatcactacagcgctgttataatg
gacgaagctcacgagcgttccttgaacactgatgttctgtttggactgctacgtgaggtt
gtatcaagacgcaatgacctgaagctcatcgttacctcggctactatggactctgacaaa
tttgctgcctttttcggcaatgtgcccatattccatattccaggaagaacatttccagtt
gacatcttgttcagcaagacccctcaggaggactatgtggaggcggcagtaaagcaggct
cttcaaatccaccttagtgggatggtgggagacatcctcatcttcatgccggggcaggag
gatattgaggtgacatcagatcagattgtggagcgtttgggagaactggataatgctcct
cctctggctgtgcttcccatttactcacagcttccatctgacctccaggccaagatcttc
cagaaggctccagatggtgtgaggaaatgtattgttgctacaaacatcgctgagacctcc
ctcacggtggatgggatcatgtttgtggtggattcaggatattgtaaacttaaggttttc
aatcctcggattggtatggacgctctccaggtttaccccatcagccaggctaacgccaac
cagcgttcaggtcgagccggacgtacaggaccagggcagtgctatagactatacactcag
agtgcctataagaatgagatgctgaccaccaccattcctgagatccagaggaccaacctg
gccaatgtggttttgttgttgaagtccttaggggttcaggacttgctcctatttcatttc
atggatccgccaccagaggacaacatgctaaactccatgtaccagctgtggattttagga
gctcttgacaacacaggcgccctgacaccaacaggacgtctaatggtggaatttcccttg
gaccctgctctctccaagatgctcatcgtgtcctgtgatatggggtgcagtgcggacatc
ctcatcattgtctccatgttgtctgtgcctgccatcttctacagacccaagggtcgtgag
gaggagagtgatcaggtcagagaaaagttctctgttccagagagcgatcatctcacttac
ctgaatgtctacaaccagtggaagaacaacaattactccagcatctggtgcaacgaccat
ttcattcacaccaaagccatgcgcaaggtgcgtgaggtgcgctcccagttaaaggacatc
atggtgcagcagaagatgaacctagtttcttgcggctcagactgggatattattagaaag
tgcatctgtgcggcgtacttccaccaagcagccaagctgaagggtattggagagtatgtt
aatgtgaggactggaatgccatgccatctgcaccctacgagctccctgttcggaatgggc
tacactcctgactacatcatttaccacgaacttgtcatgaccactaaggagtacatgcag
tgtgtgactgcagtggatggagagtggctagcagagcttggaccaatgttctacagcgtc
aagcaagcaggaagaagcagacaagagaaccgccgtcgtgccaaagatgagatcaccaac
atggaggaggaaatggccatggcacaggagcaactccgcacgcgtcgagaggagcaggag
aagaagagcaacatgaacattgtcagggcagttaaaatctgcaccccgggaagaaaagaa
gaggcccccatgacacccagacgcaccccggctcgctttggactttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (59)   

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