KEGG   Oryzias latipes (Japanese medaka): 101159615
Entry
101159615         CDS       T02443                                 
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X2
  KO
K06252  tenascin
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola04510  Focal adhesion
ola04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ola00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101159615 (tnr)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101159615 (tnr)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ola00536]
    101159615 (tnr)
Glycosaminoglycan binding proteins [BR:ola00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101159615 (tnr)
SSDB
Motif
Pfam: fn3 Fibrinogen_C EGF_2 EGF_Tenascin Pur_ac_phosph_N Interfer-bind DUF4998
Other DBs
NCBI-GeneID: 101159615
NCBI-ProteinID: XP_004079390
UniProt: H2MNQ9
Position
17:complement(24489780..24629157)
AA seq 1380 aa
MPLAEQHHLATMSATTWILALAVLLALQGAAHAAPSGDNKLVRTSRVKRQTPGGDQPPSA
SSANQTLKEQPLIFNHVYNINVPLESLCSVDLDASAAPAPDSHAELGSRPSVEGPMDPDG
SGPTEFTEQTLDADSQVTFTHRINIPKAACGCPATMAIQQLATRVEMLEREVSMLRAQCG
SGCCGESSAMGHLDFIPSCSGHGSFSFDLCGCICEESWTGKNCSEPRCPNDCSGQGMCIE
GECVCDRDFGGDNCSEPRCPSDCSGRGLCIDGECVCEESFTGEDCMVGRCLNDCSDQGMC
INGTCQCRPGYVGEDCSMVYCANNCSKKGICKEGFCVCQDGFAGDDCNSVAPAMNLNVRG
VTDHTINLEWEGSIMITDFLVTYTPSTPGGVQLEIRIPGNATSCSISGLEAGLEYNINVF
AVINNTISIPASITVWTYLSNPDGLLFKSITETSVEVQWNPFYYSFDGWEISFIPQDNDG
GMTAQLPSTINSFVQTGLRPGEEYTVNLVALRDQGRSQPVTATFTTLIDGPTQLIVRDVS
DTVAFVEWTPPKAKIDQIVLRYGLLGGEGPRTTFRLQPTLRQYSLQVLRPGSRYEVSVSG
VRKGNESGSISTQFTTEIDAPKNLRLVSKTSTTLELEWDNSEAEVDAYQVVYSTLAGDQY
DKVIVPRNEGATTKTTLTDLLPGTEYGIGISAMKGSNQSTPATMNARTGLDEPMDLTVTA
STDKTITLVWGAVQGPIDLYKITYTSSSGVTSELTVPKDVTTTTLIDLEPGTEYTITVAA
RRGRQQSNAATIDAFTGIRPVTHLYLSEVTSDSVSVAWSAPAPPADLFILSYSSADGTDT
SKVTLDGSKTRSLVQGLLPSTHYTISLITIQGDSTSEPITASLVTGMDPPKELTVLDVTE
DVVTINWIKPLAPFEYYKLSYQSARGRVDSVMIDSDVTNYTLSSLFPATEYEISLSAVRG
SQESKVVSTSVFTAMDMPAELTALNITPQGALLRWKPPVSNVDNYVLTVTHNQVTADTFL
VEGNKQEHQLSSLKPITTYSVALYATKGPLTSGTVITNFQTPMDAPVNLTASEVNHRSAL
ISWQPPLAEIDNYMLTYRSSDGSRKELILDAEDMWIRLEGLAESTEYTVKLQAARGLDTS
AVVSTTFTTGSRLFATPQNCAQHLLNGETLSGVYTIYINRDPSQGVQVYCDMSTDEGGWI
VFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIHRIASQGRYELRIDMKDGQESVY
ANYDKFSIGDARNLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCALSYKGAW
WYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKRRRSASV
NT seq 4143 nt   +upstreamnt  +downstreamnt
atgccactggcagagcagcatcacctggccacaatgtcagcaactacctggatcctggcc
ttggctgtgctacttgctttgcagggcgctgctcacgctgctccatcaggagacaacaag
cttgttcgaaccagccgagtgaagaggcagaccccagggggggatcagcctccctctgct
tcctcagcaaaccagaccctgaaggaacaacctttgatctttaaccatgtctacaacatc
aatgtacccttggagtcactgtgttctgttgacctggacgcctctgcagcaccagcccca
gattcccatgcagagttaggatccagaccctcagtggagggtccaatggatccagatggt
tctgggccaacagaattcacagagcagacactggacgctgacagccaggtaacgtttacg
caccgcatcaacatcccgaaggcagcatgtggttgtccagcaacaatggcgatccagcag
ttagccactagagtggagatgttggagcgagaagtttccatgctcagggctcaatgtgga
tctggatgttgtggagaaagttctgcaatggggcatctggactttatcccaagctgcagc
ggtcatggaagcttcagctttgatttgtgtggctgcatctgtgaggaaagttggacgggg
aagaactgctctgagcctcgctgccctaatgactgctctggtcagggcatgtgcattgaa
ggggaatgcgtgtgtgaccgtgactttggaggtgacaactgctctgagccacgctgccct
tcagattgctcaggccgtggtttatgtattgacggcgagtgcgtgtgcgaggagtccttc
acgggggaagactgcatggttggaaggtgtctcaacgactgctcggatcaggggatgtgc
atcaacgggacttgccaatgccgacccggttatgtgggagaagactgttcgatggtctac
tgtgccaacaactgcagtaagaaaggaatctgcaaagagggtttctgtgtctgccaggat
ggcttcgctggagatgactgcaactctgtggctccagctatgaacctgaacgtgcgagga
gtgacggatcacaccatcaacctggagtgggaagggtcaatcatgatcacagatttctta
gtgacctacacaccaagcacaccaggaggtgtgcagctcgaaatcaggattccagggaac
gccaccagctgctccatttcagggctggaggcaggcttggagtacaacatcaatgtgttt
gctgtcatcaacaacactatcagcattccagccagtattactgtgtggacctatctctcc
aatcctgatggtttgctcttcaaatccatcacagagacgtcagtggaggtccagtggaat
cctttttattattcctttgacggatgggagattagcttcattccccaggataatgatgga
gggatgactgcacagttgcctagcactatcaattcatttgtacaaactggcttgagacct
ggagaagaatacacagttaacctggtggcgctcagagaccagggtcgaagtcagcctgtt
actgctactttcacaacattgattgatggtcctacccagctgattgtgcgggatgtgtca
gataccgttgcatttgtggagtggacgccaccaaaggcaaagatagatcagattgtgttg
cgttatggtcttttgggaggagaagggccacgaaccacattccgtctccaacccaccctg
agacagtactctctacaggttctccgtcccggctcacgatatgaggtgtctgtgagcgga
gtaaggaaaggaaacgagagtggatctatttccacccaatttacaactgagatcgatgcc
ccaaagaacttacggctcgtatcgaagacctccaccacccttgagcttgagtgggataac
agtgaggccgaggtggatgcctaccaggtggtctacagcactttagccggagaccagtat
gataaagtcatcgtacctcgcaatgagggtgcaacaacaaaaactactctcacggatctg
ctgccaggcacagagtatggaattggcatttctgccatgaaaggcagcaaccagagtaca
ccagcaacaatgaatgccaggaccggtttggatgaaccaatggatctaacagtgacagct
tctactgacaagaccatcactctggtgtggggcgcagtccagggtccaattgacctctac
aagatcacttacacttcttcctctggcgtcacttcagagctgacagtacccaaagatgta
accaccaccactctgatagacctggagcctggaactgagtacaccattactgtagcagca
aggagaggaagacagcagagcaatgcagctactatagacgccttcacaggaatcaggccg
gtaacccacctctacttatcagaggtgacttcagactcagtgtcagtggcatggagcgcc
ccagcaccacctgctgacctcttcattttgagctacagttctgctgacgggactgacacc
tctaaggtgacgctggatggctccaagaccaggtcactagtccagggtctgctgccatcc
actcattacaccatcagtctaatcacaattcagggtgattctacctctgaaccaattaca
gcgtctcttgttacagggatggatccaccaaaagagctgacagtgctggacgtgactgag
gatgtagtgaccatcaattggatcaagccactggctccatttgagtattacaagctctcc
taccagtcagccagaggtcgagtggacagtgtgatgattgacagcgatgtgacaaactac
accttgtccagtctgtttcctgccacagagtatgagatcagcctcagtgctgtcagagga
agtcaggagagcaaagttgtcagtacatctgttttcacagcaatggatatgccagctgag
ttaacagctctcaacatcaccccacaaggagccttgttgaggtggaaaccaccggtgtcc
aatgttgacaactatgtgctgacagtcacacacaaccaggtgacagctgatactttcttg
gtggaaggcaacaagcaggaacaccagctttctagtctaaaaccaatcaccacctactct
gtagctctctatgccactaaaggaccactaacaagcggcaccgtcataaccaattttcag
acacccatggatgcacccgtgaacctcacagccagtgaagtaaaccaccgcagcgctctc
atttcatggcaaccaccacttgcagaaattgacaactacatgctcacctacaggtcatct
gatggcagccgcaaggagctgatccttgatgcagaggacatgtggattagattagaggga
ttggctgagagtacagaatacactgtcaagcttcaagctgcaagaggacttgacaccagc
gctgttgtctccactacctttaccacagggagtcgactgtttgcgactcctcagaactgt
gcccaacacctgctgaatggcgagacactgagtggcgtctacaccatttacatcaacagg
gacccgagccagggtgtgcaggtgtactgcgacatgagcactgatgaaggaggctggatt
gtctttcagcgtcgtcagaatggcctgactgacttttccaggaagtggagtgactatcgt
gttggttttggaaatttggaggatgagttctggcttggtcttgacaacatccacaggatt
gcttctcaaggtcggtatgagctgaggattgacatgaaggacggacaggagtcagtctat
gcaaattatgacaagttctccattggagatgcaagaaacctctacaagctcaggatagga
gagtacaacggcacagctggcgactctctgagctaccaccagggccggcccttctccaca
aaagacagagacaatgacattgctgtcactaactgtgccttgtcttataaaggagcttgg
tggtacaagaactgccaccgtgccaacctcaatggcaaatatggcgagtccagacacagt
cagggtatcaactggtaccactggaaaggccacgagttctctattccatttgtggagatg
aagatgaggccatttaacttccgtagcatcagcagcaagaggagacggtctgcttctgta
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (7)   
   Pfam (7)   
All databases (62)   

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