KEGG   Oryzias latipes (Japanese medaka): 101164466
Entry
101164466         CDS       T02443                                 
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ola03016]
    101164466 (rtcb)
Enzymes [BR:ola01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     101164466 (rtcb)
Transfer RNA biogenesis [BR:ola03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    101164466 (rtcb)
 Prokaryotic type
   tRNA splicing ligases
    101164466 (rtcb)
SSDB
Motif
Pfam: RtcB Cu-oxidase_4
Other DBs
NCBI-GeneID: 101164466
NCBI-ProteinID: XP_004087012
UniProt: H2N0L9
Position
23:complement(23749986..23753748)
AA seq 505 aa
MSRSYNDELQYLEKLSGTCWRIKKGFVPNMQVEGIFYVNEPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVNRSIGLPDVHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISRKAIKLRPIAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagcagaagctacaacgatgagctgcagtacctggagaagctgtccgggacttgctgg
aggattaagaagggcttcgtgcccaacatgcaggttgaagggatcttctacgtgaacgag
cctctggagaagctgatgttcgaggagcttcgtaacgcctgtcgaggaggaggtgtgggt
gggttccttcctgccatgaagcagatcggaaacgtggcggcgctgcctggcatcgtgaac
aggtccatcggtctgccggacgtccactccggttacggattcgccatcggaaacatggct
gcgtttgacatgagtgatcccaacgccgtggtgtctccaggcggcgtgggattcgacatc
aactgtggcgtccgtcttctaaggactaacctggacgagcgggacgtccagcccgtgaag
gagcagctggcccagtcgctgttcgaccacatcccggtgggggtcggctccaaaggagtc
atcccgatgggagccaaagacctggaggaggcgctggagatgggcgtggactggtctctg
agggaggggtacgcctgggccgaggacaaggagcactgcgaggagtacggccggatgctg
caggccgaccccaacaaggtgtcgtccaaagccaagaagagaggcctgccgcagctggga
actctgggagcaggaaaccattacgccgagatccaggtggtggatgagatctacaacgac
tacgcagccaagaagatgggcatcgaccacaaggggcaggtgtgcgtgatgatccacagc
ggcagcagaggcctcggacaccaggtggccacagatgcgctggttgccatggagaaggcc
atgaagcgcgacaacatcacagtgaatgaccgacagctggcgtgcgcccgcatcacctcc
caggaggggcaggactacctgaagggcatggcggccgcagggaactacgcctgggtcaac
cgctcctccatgacctttctcaccagacaggccttctccaaagtgttcggaaccacgccg
gacgacctggacatgcacgtcatctacgacgtgtcccacaacatcgccaaggtggaggag
cacatagtggacggcaagcagaggacgctgctggttcaccgcaaaggctccacccgcgcc
ttcccgccgcaccaccctctgatccccgtggattaccagctcacaggtcagccggttctg
atcgggggcaccatgggaacctgcagctacgtcctgacgggcaccgagcaaggcatgacg
gaaacgttcggcaccacctgccacggagcgggccgggccctgtcccgggcaaagtcccgc
cggaacctggactttcaggacgttcttgacaagctggctgacatgggcatcgccatccgg
gtggcgtcacccaagctggtcatggaggaggctccggagtcgtacaaaaacgtgacggat
gtggtcaacacgtgtcacgacgccggcatcagcaggaaggccatcaagctacggcccatc
gccgtcatcaaaggctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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