KEGG   Oryzias latipes (Japanese medaka): 101172662
Entry
101172662         CDS       T02443                                 
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    101172662
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ola03009]
    101172662
Ribosome biogenesis [BR:ola03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    101172662
SSDB
Motif
Pfam: EloA-BP1 RNase_T KIX_2 Val_tRNA-synt_C Med15
Other DBs
NCBI-GeneID: 101172662
NCBI-ProteinID: XP_004072146
Position
9:1945571..1955308
AA seq 1060 aa
MFPSSGLFAGITCPVARRGRCQRPHCFYGHAAADASGLHDSSIVDLTGEDSDGPHAARGA
PVNRELSDHCFHELERLNKEIESVRHEVEREQRRLSSYTSKSADRSSTPTYESRGFHGPP
SSAEQKNPVPTRKYLVDNSRPRTDLEYDPLSNFSAALRSYSSSGKKSKIQQEWRRSTPEA
KELAAPASGFSSLELLEDATEDSVLVIDEVSVPEDSNGRVSAGSKPPPCAEETVKELQMM
TATIDSSHTSLKNLEETHRRLVCGTAAAKQTCSADGTAGSPDPDVPSGSRPAPEPPGSAE
KTQIQQPPTPAGRSARASGHGGTPGRSSAPSPRPKTPPVGSRQPAEAAPPAGRPPTSTVS
MSEDLRTESSGPAAKTIIEINSSPEDDDDDDDGEEDDDHRYSDVELSDSDPMEECYRIFM
EANNQDYPDASLEDDAEKLQINVGLQASAGKKRVAHDDRNPEQPQAKSRPQPQVLVPLRE
PPAPTYGARASVSRIQQVQQRASMLTASVKAGQAFVSAMTQRSQEEIRAAHALAPPPAHL
QSAALQHAYVNYIPVGTAVIEVGNNLHLILPQGAFPLPVASTSTPSVLTPVCQVHPNAVG
QACHPAAVMPRSRSAAPPVVVAAPLRRPALTAASSSACLPSAAPQPAAKTAQKPNKRKLK
QQSEASKEKVPHNVRQRYVNMFTEEFLKSTKDVNEAFQKALSEEKSVFNRSANKLKYLSV
AVNALKRLKNQSAAAPKNETEVITQRSKGNIPLSPKKFRGKADDTAFYESLKDYILSDDR
MIENNYPVQHPEKRGCAALFNEKKPNPDPLKRICCRCGSTYSVSQSGKHVRKEECNYHYG
KGVKNKVPGGVETRYSCCQGVMGAPACQLFKLHVHDSLSLEGFVSTAARSPSDAACPGVY
ALDCEMCYTVRGLELSRVTVINSDLQVVYDAFVKPDSEVIDYNTRFSGICEKDVAGSSAS
LEEVQQTLLSFINADTILIGHGLETDLCLLKLLHGKVVDTSVVFPHRLGPPHRLSLKHLT
AEHLRRIIQESVCGHDTAEDAAACMELMLWRVKEDGKMKR
NT seq 3183 nt   +upstreamnt  +downstreamnt
atgttcccgtcgtccggactcttcgctgggatcacgtgtcccgtcgcgcggcgtggacgc
tgtcagcggccgcactgtttctacgggcacgcggcggcggacgcgtccggccttcacgac
tcctccatcgtggatttaacaggagaagattccgacggtcctcatgcagcccgtggcgct
cctgtgaacagagagctctcagaccactgcttccatgagctggagaggctcaacaaggag
atcgagagcgtgaggcacgaggtggagcgggagcaacggcgcctgtccagctacacctcg
aaaagtgccgacaggagcagcacgccaacgtacgagagccggggctttcatggaccgccg
tcgtctgcagagcagaagaaccccgtcccaacaaggaagtacctggtggacaactccaga
ccaagaaccgatttagaatatgaccctttgtccaacttctctgctgccttacgctcgtac
agctcttcaggaaagaaaagtaaaatccagcaagagtggagaagatccacgcctgaagca
aaagaacttgctgctccagcttctgggttttcatctctggagctcctggaggacgccacg
gaagacagtgttctggttatcgacgaggtttctgtgcctgaagactcgaatggccgggtt
tctgctggaagtaaacctccgccgtgtgcggaggaaactgtgaaggagctccagatgatg
accgccacgatcgactcttctcacacgagcctcaaaaacctggaggagacccatcggcgt
ctcgtttgtggtactgcagccgccaaacaaacctgctcagctgatggaaccgcaggttcc
ccggacccggatgttccgagcgggagccgtccagcgcctgagccgcctggcagtgccgag
aaaacgcagatccagcagcctccgactccagctggtcgctcggctcgtgcttcaggtcac
ggcggcacacctggacgaagctcggcgccttcgccacgacccaaaacgccgcctgttgga
tcccggcagcccgcagaagctgctccacccgcgggacgacctcccacttccaccgtttca
atgtctgaagatttgagaacagagtcatctggacctgctgccaaaactatcatcgagatc
aactccagccctgaagatgatgatgatgatgatgatggagaggaagatgacgaccacagg
tattcggatgtggagctgtcggacagtgacccgatggaggagtgctacaggatcttcatg
gaggcaaacaaccaggactatcctgacgcgtctttggaagatgatgcggagaagctgcag
ataaatgtgggacttcaggcgtctgcagggaagaagagggtcgcccacgacgacagaaac
ccagagcaaccgcaggcgaagagcaggccgcagccgcaggttctggttcccctccgggag
ccaccggcgccgacgtacggcgcacgggcctccgtctcgaggatccagcaggtgcagcag
agggcctccatgctgacggcgtcggtgaaggccggccaagcttttgtttctgccatgacc
cagaggagccaggaagagatcagggcggcacacgcgttggctccgcctccggcacacctg
cagtctgctgctctgcagcacgcttatgtgaactacataccagtcgggacggcagtcatc
gaagtgggcaacaacctgcacctgatcctccctcagggggcttttcctcttcctgttgcc
tccacctccaccccttctgttctcactccggtctgtcaggtgcatccaaacgccgtcggg
caggcgtgccatcccgccgctgtgatgccaaggagccgttcggcagcgccccccgtggtc
gtggctgctcctctgcgccggcctgcgctcaccgccgcttcttcatcggcgtgtttgccc
tcagccgcccctcagccggcggcaaagacggcccagaagcccaacaagcgtaaactgaag
cagcaaagcgaagcgtccaaagagaaagtcccgcacaacgttcgccagcgctacgtcaac
atgttcaccgaggagttcctcaagtccacgaaggacgttaacgaagcctttcagaaggcc
ctgagcgaagaaaagagcgtcttcaaccgcagcgcaaacaaactcaagtacctgagtgtc
gctgtgaacgccctgaagaggctgaagaaccaaagcgccgctgctcccaagaacgagaca
gaagtcatcacccagagatctaaaggaaacatcccactgagccccaagaagttcagagga
aaagcagatgacacggctttctatgaaagtctgaaggattatattctgagtgatgacaga
atgatagagaataattatcccgtccagcacccggagaagcggggatgtgcggcccttttt
aacgaaaagaagccaaacccagaccccctgaaacggatctgctgtcgatgtggatccacg
tactccgtgagccaatcgggcaaacacgtccgcaaggaggagtgcaactaccactacggc
aaaggggtcaaaaacaaagtgccgggtggagtggagacccgctacagctgctgtcagggc
gtcatgggagctccggcgtgtcagctgttcaagctgcacgtccacgattccctgagcctg
gaagggtttgtgtccacggcagccaggagcccgtcggatgcggcgtgtcctggggtttat
gctctggattgtgaaatgtgttacaccgtccgcggcctggagctgtccagagtcaccgtg
atcaactcggacctccaagtggtctacgacgccttcgtcaaacccgacagcgaggtcatc
gactataacaccaggttttcgggtatctgtgagaaggacgtggcggggagcagcgcctca
ctggaggaagttcagcaaactctgttgagcttcatcaacgcagacaccattctcattgga
cacggcctggaaacagacctctgtttgctgaagctgcttcacgggaaggtcgtggacacg
tcggtggtcttcccccaccgcctgggccccccccacaggctcagcctcaaacacctgacg
gccgaacacctccggaggatcatccaggaaagcgtttgtggccacgacactgcagaggat
gcagctgcctgcatggagctgatgctgtggagggtcaaggaagacggaaaaatgaaaaga
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (76)   

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