KEGG   Oryzias latipes (Japanese medaka): 105355159
Entry
105355159         CDS       T02443                                 
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
  KO
K16630  collagen type XXII alpha
Organism
ola  Oryzias latipes (Japanese medaka)
SSDB
Motif
Pfam: Collagen VWA VWA_2 Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 105355159
NCBI-ProteinID: XP_023815970
Position
11:24420050..24495819
AA seq 1623 aa
MELRLGFRLSLMCFILAFTFSQQRVEAQRAGCKNVHYDLAFILDTSSSVGKDNFEKIRKW
VADLVDSFDVSPDKTRVAVVLYSDRPTIEFNLSRHKTLEDVKRAARNIRFLGGNTMTGDA
ISYTTRNIFAERNGARPQAKGVQRVAILLTDGRSQDYVLEPSQEAAKAGIRMFAVGIGEA
LKEELEEIAAAPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPKMKVQPDRFKPNSTSY
GLKEVPGFDLMEYFSVTDILGGRIDDGQSLYVRLGTMPMVQQTEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQIYDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRDWHKIALSVEAKSVSLYLDCKHIQTLPIEDREDIDIHGKTVIGKRVYDSVPIDFDL
QRMMIYCDSKHAELETCCDIPKAPCHNTIVTEAPPVEILTPTPTAAEQKKPPDVNCSSCS
SGEKGDIGAPGVAGPKGEKGDSGPKGAAGPAGAKGEKGDSGRLGSVKGDRGEKGDRGSVG
LPGPPGLKGEKGVGGIPGIDGLSGDKGDRGEAGPPGVPGEPGETGEKGIQGDTGVPGLPG
PKGVTGDSGTKGESGAPGTRGEAGLDGFPGKPGLPGKDGLRGLAGAPGPNGIKGDKGERG
LPGLPGDVIQKEGLRGEKGDAGPPGPPGAVGPPGPAGPPGPQGLPGEHGDPGQGGKKGES
GLPGVDGLPGPQGPNGPPGPQGIQGPPGPSGLPGERGFSGKQGEPGKPGLPGKDGLDGLA
GRDGSPGLQGERGADGFPGKPGPKGDEGPPGPRGPPGERGEAGTPGRPGGEGVRGERGTP
GDRGLQGPIGPKGDKGDQGEVGPRGPPGIPGNVENVIPEPGEPGKPGEKGEKGDQGKPGE
PGQSGLPGEQGFKGAPGAVGPKGDQGLPGEPGRVGDPGPPGVAGTQGPRGPPGNVGIPGI
IGPPGPAGQRGDKGEPGKPGQSGPQGPPGEPGMTGPPGPPGRGKDGLNGDPGQQGVQGPP
GPKGPPGPRGQQGMPGDRGPAGEGKEGPSGPPGKDGAPGPAGLRGLPGVAGPQGPAGHNG
LPGRPGEKGSPGEPGKAADLSDLDLKDVCSDCPAGPPGPPGLPGIPGDKGQQGPPGKNGQ
DGYQGPTGLPGAQGPPGADGAKGIKGDRGPAGNPGDKGEKGHPGPPGHPGPPGILGTPGN
DGPPGPTGPPGPPGEKGKEGLKGIQGPPGLPGLIGQPGKMGKDGRPGEPGEPGKQGEPGP
PGNPGLRGLPGFKGHRGEAGAPGPKGEDGKPGSAGRDGKPGKEGPKGPPGPEGLLGPRGE
PGKPGEPGPSGKAGIPGAPGLRGDKGEAGNPGLPGFSGPKGPAGPPGPFGPEGKQGMPGR
AGDRGLKGDKGDPGTKGDKGQSGDPGIPGNPGPPGRKGHTGMMGMSGPPGEIGPPGPQGT
SGNPGLPGPRGESVSLEEMRRLIQEELAKQLDAKLAYLMSQIQPAHVKSVAGRPGPPGLP
GKDGSPGRQGPAGEPGMPGQNGGEGPRGPMGPKGEKGAKGEKGEPGVGDRGEPGPVGPIG
PAGLPGYGKDGSPGQAGAQGEPGNPGPHGQPGPPGPPGQCDPSQCAYYASLAQRPHTKNV
KGK
NT seq 4872 nt   +upstreamnt  +downstreamnt
atggaattacgactgggatttcgactcagtctgatgtgcttcatcttagccttcactttt
tcccagcagagagttgaagcacagagagcagggtgcaaaaatgttcactatgacttggct
tttattcttgacacttcatccagcgtggggaaggacaactttgagaagatacggaagtgg
gttgccgacttggtggattctttcgacgtgtctcctgataagacaagagttgcagtggtt
ctttacagcgacagacccaccattgagtttaacctgagccgacacaaaacactagaagac
gtcaaacgagctgcccgaaacattcgcttcctgggaggaaatacgatgactggagatgct
atcagctacaccaccagaaacatcttcgccgagaggaacggggcgaggcctcaagccaaa
ggtgttcagagggtggccatcctgctgacggacggtcgaagccaggattacgttctggag
ccctctcaggaagctgcaaaggccggaatccggatgtttgccgtgggtatcggggaggct
ctgaaagaagagctggaagagatcgcagcggcgccaaaaaatgcacatgtctttcacgtg
accgacttcaacgccatcgacaaaatcagaggcaggctgaggaggcggctgtgtgagaat
gttctgtgtccaaaaatgaaggtccagcctgatcgtttcaagcccaacagcaccagctat
ggtctgaaagaagttccagggttcgacctgatggagtatttcagcgtgacggacattctg
ggaggcagaattgatgatgggcaaagtttatatgttcgtctggggaccatgccgatggtc
caacaaacagaagacgtgtttcctcaggggctgccagacgaatatgcctttgtgacgaca
ttcaaattcagaaaaacctccagacgagaagattggtacctttggcagatttatgataaa
tatggaatcccacaggtgtccattcgtctggacggcgagaacaaggcggtggagtacaat
gctgtggggctgacaaaagatgctgtcagagctgtgttcaaaaaccctgaagttgacaac
ttgtttgaccgcgattggcataaaattgctcttagcgtagaggccaagtctgtctctctg
tatctggactgcaaacacatccagactctgcccattgaagacagagaagacatagatatc
cacgggaagactgtaattggcaagcgagtgtacgacagtgtgccgattgattttgacctc
cagaggatgatgatttactgtgattccaagcatgcagagctggaaacctgttgcgatatt
cccaaagcaccatgccacaatactatcgtgacggaggccccccctgtggaaatcctcact
ccaacacctaccgctgcagagcagaaaaagccccctgatgtgaactgctcctcttgctcc
tcaggggagaagggagacattggtgcccctggtgttgcaggcccaaagggtgaaaaggga
gacagtggccctaaaggtgccgccggaccagctggtgccaaaggggaaaaaggagattct
ggcagattgggctctgtcaaaggtgacagaggcgagaagggtgatagaggcagtgtaggg
ctgccaggtcctcctggactgaaaggagagaagggtgttggtgggattcctggtattgat
ggattatcgggtgacaaaggagacagaggagaagcaggccctccaggtgttccaggggag
cccggtgaaacaggagagaagggaatccaaggagatacaggagttcctggtctacctgga
ccaaaaggtgttactggggattctggtaccaaaggagaaagtggagctccaggaacaagg
ggtgaggcaggattagatggatttccaggaaaacctggacttcctggaaaagatggtctg
cgaggtctagctggagctcctgggccaaatggaatcaaaggtgataagggggagagaggc
cttccaggattacctggggatgttatacagaaagaaggcctaagaggggaaaagggggat
gctggacctcctggccctccaggagcagtgggccccccaggacctgctggtcctcctggt
ccacaaggtcttcctggggagcatggagatcctggtcaggggggaaagaaaggtgaaagt
ggactgcctggagtagacggtctgcctggaccacagggtcctaatggaccgccggggcca
caaggaatccaaggcccaccgggaccgtctggtcttcctggggagcggggattttcaggg
aaacaaggagaaccaggaaaacctggccttcctggtaaagatggtctggacggtctggct
ggaagggacgggtctccggggctgcaaggagagcgaggggcagatggtttccctggcaaa
cctggaccaaagggggacgaggggcctccagggccaagaggtcctccaggagagagaggg
gaagccgggacccctggccggcccggaggtgaaggtgtgaggggagaaagggggactccg
ggagacaggggtctgcagggacccatcgggcccaaaggggataagggtgaccagggtgaa
gtgggaccgagggggccgcctgggatcccaggaaacgtggagaacgtcatcccagagcca
ggggaacctggaaaacccggagagaaaggggagaaaggggaccagggaaaaccaggagag
ccgggtcaaagcggattacctggagaacaaggcttcaagggagcacctggagccgtgggt
ccaaagggggatcaaggattacctggagaacctggtcgtgttggagaccctggtccacct
ggagtggccgggactcagggtccacggggacctccagggaatgtgggcatccctgggatc
atcgggccccccggcccagctggccaaagaggagacaagggggaaccaggtaaaccagga
caatccggtccccagggaccacctggtgaaccaggcatgactggacccccaggaccacca
gggaggggaaaagacggtctgaatggagatccgggacaacagggggttcagggcccccca
ggaccaaagggccctccagggcctcgcggacagcaggggatgccaggagacagaggtcca
gcaggagagggcaaagagggcccatcgggtcctccaggaaaagacggagcgccggggccc
gcgggtttaagaggccttccaggagtcgcaggtcctcagggcccagcaggacacaatggt
ctaccaggaagaccaggagagaagggatcaccaggagagcctggaaaggctgccgacctc
tcagacctggacctgaaggatgtttgctcagactgtcctgccggcccacctggaccaccg
ggactgccaggaataccgggagataaaggacagcagggaccccctgggaaaaatggacaa
gatggataccagggtccaactggactgcctggtgctcaaggaccccctggagctgatgga
gcaaagggcataaaaggtgatcgaggacctgcaggaaaccctggagacaaaggcgagaag
ggtcacccaggacctcctggtcatccaggccctcctgggattttgggaactcctggtaac
gatggaccgcctggcccaacaggacccccagggccccctggagaaaagggtaaagagggt
ctcaaaggaatccagggtcctccgggtcttcctggtttgataggtcaacctggaaaaatg
ggaaaagatggcagaccaggagaacctggagaacctggtaaacaaggggaaccaggacct
ccaggaaaccctggactcagaggacttcctggattcaaaggccacagaggagaagctgga
gctccaggacctaagggagaagacggaaagcctggatcagctgggcgtgacggcaaacct
ggcaaagagggtcccaaaggacctccaggcccagagggacttctcggtccaagaggagaa
ccagggaaaccaggagaacctggaccgtctggaaaagcaggcattcctggagctccaggt
ctcaggggagataagggagaagctggcaaccctggattaccgggtttcagtgggcccaaa
ggtcctgcgggcccacctggtccatttggtccagagggaaaacaaggaatgccgggcaga
gctggtgaccgcggcctgaaaggtgacaagggagacccaggcaccaaaggggacaaaggg
caatctggagatccaggtatacctggtaatcctggccccccaggcagaaaaggccacaca
gggatgatgggcatgtcaggaccaccaggggaaattggaccccccggaccacagggaact
tcaggaaaccctggtctcccaggtcccaggggggagtctgtgtcactggaggagatgagg
aggctcattcaggaggagctggcaaaacaattagatgccaaactggcttatctcatgagt
cagattcagccagctcatgtcaagagtgtagcgggtcgtcctggacccccaggccttcca
gggaaggatggcagccctggacgccagggtcctgctggagaaccaggcatgcccggacag
aatggaggagaaggacccagaggccccatgggccctaaaggtgaaaaaggagcaaagggt
gaaaagggagaacctggtgttggtgacagaggggagcccggccctgttggtcctatagga
ccagctggtttgcccggttatggaaaagatggaagcccgggacaagctggagctcaggga
gagccaggaaaccctggcccccacggccaacctggtcctccgggccctcccggtcagtgt
gatccctcccagtgtgcctactacgccagcctggcacaaagaccccacaccaagaatgtg
aaggggaaataa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (68)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (84)   

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