KEGG   Oryzias melastigma (Indian medaka): 112137372
Entry
112137372         CDS       T07439                                 
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
  KO
K10897  partner and localizer of BRCA2
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03440  Homologous recombination
oml03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    112137372 (palb2)
   03460 Fanconi anemia pathway
    112137372 (palb2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oml03400]
    112137372 (palb2)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA complex
     112137372 (palb2)
   FA (Fanconi anemia) pathway
    Downstream FA components
     112137372 (palb2)
SSDB
Motif
Pfam: PALB2_WD40 PAS
Other DBs
NCBI-GeneID: 112137372
NCBI-ProteinID: XP_024115439
Ensembl: ENSOMEG00000020024
Position
LG1:complement(11480635..11488501)
AA seq 1266 aa
MNTNVGDILQCEKQLREALHSDDKEKLRRKLAQLKREYVKTAQRLQRAERLEAVRRHVRS
RISEQNQLDHRESEAAAASRDKSPSLILNTTDAQDPGSGQSQEHTPDSDPSRRSQVIRFI
LPSDPASPQPPDSHHDSGGGHRPSSVLRLRSRRSRLRWERRSAEADQSTGVSLKGQEQSE
SIQLTAEEEGGTVQWRRTDAVNESEEKLSGSDSDSPSLLLTHWSTRKKAENGDEERTENC
GRHEERESKTDVVPEATCEYLLSTEEPKQSGENKEEGDVRKDEEEKKKCNEEDNKKPEQT
ETMDNNSNVEIEEKFQTSGERSEKGLLDSCTLVEGLLFPVEYYVRTTRRMTSSQSQPDIQ
AVLFSQLSVGRQRRSRGRGGGASGSSGRRTHSSPVTSSTSPLNSSFSQPFGSPAGEGPMN
SDAGFSPTVTTARPPRGRRKRRGRGRGRPQTPKRSFNWEGSQPPDDVAPSLSQSLPNSEE
PNHVFSPQGAVKELDTGRHVSASGSASLSSSGVTAAQLDRVYPIFMKSFKKNTPPQTIGG
PPDWTPLLLPPTSSPVQTSLLSLPSPSLCSLIASLKSLDVHQDFHLPDEHFASLKLHKLR
QVAVESGIEHFSTPSGNTRSSLRRSDLSDSWTAVPLLLTSTPTTTDFLLPDEDVHSDFPH
RSEKLSSSFTKEQTDIAEDVENIQSSPDSPVVVQEVTENNLLEPETAENQCISLNCDHIK
PHNKLTDLQTCSKQASPGEQAGVCGGGCAGQDHSSVPPEAKSRSETPNLDQCRKESPEEP
YNVNTISQDAGKTEDAVNVQKDSVDSKEANLSEENRPENHPPDLPSAPCPFLSPHLPSTL
ISSPALPSLGLTPHPVAGVLPLTPSPSAPSLSLPPPPSPSTQPLPPPALSPCPSPTVEST
VCPTLTCAQRRRSGSPTPAEKPTMRHAHTLKAAAGGLLVDACSFLRASGDVCVAAAGKWA
VCLWSQTSAADWSLIHTWTFSEPVINVFPVPDAAGLICVTLGQLEIREVRVLSCSSLMQM
LICEGIIQVVVGVSKSRVVTSARFTTGSTLQVFALSDDSRSQRCQPLASLGVCVSALAPV
DGLPDALIATDEDGRLFIWNIKTGQLLRKVQLERRLSHTAGLRGFSVSGALLVLLQHLPP
SSPQDEDETKVGGPSEESEKALFSLVCINPLTGSSVLVTRLTPPPTWRGRLCEADVNQSC
VAALSTSGCVCVWELGRGGGAQVLKAPEGEDWQLVRWGDEDALVIGHQNGDVSLYVCSAA
QTSFCL
NT seq 3801 nt   +upstreamnt  +downstreamnt
atgaacacgaatgtcggagatatcctgcaatgcgagaagcagctcagagaggcgttacac
agcgatgacaaggagaagctgcggaggaagttggcgcagttgaaaagggagtatgtgaag
acggcgcagagactgcagcgcgcggagcgtttggaagcggtgaggagacatgtcagaagt
cggatctctgagcagaaccagctggatcaccgggagtctgaggctgcagctgcgtcacgt
gacaaatccccatcattgatcctgaataccaccgatgcacaggatccagggtcaggacaa
tctcaggagcatactccagattctgatccatcaaggagaagccaggtgatcaggtttatc
ctcccctccgatcctgcatccccacaacctccagactcccaccacgactcaggtggaggt
cacagacccagttctgtcctgcgcctacggtcacggcggagccgccttcgctgggaaaga
agaagtgcagaggcggaccaaagcacaggcgtcagcctgaaaggacaagagcagagcgag
agcatacagcttacagctgaagaagaaggagggacggtccagtggaggagaacggatgct
gtgaatgaaagtgaagagaagctttctggttcagattccgactccccgtctctgctgctc
acacactggagtacacgtaaaaaagctgaaaatggagatgaagagagaacggagaactgt
ggacgccatgaggaaagggaaagcaagactgatgtggtgcctgaagccacatgtgagtat
ttattatctactgaagagccgaagcaaagtggggaaaacaaagaagagggtgatgtcaga
aaagatgaggaagaaaaaaagaaatgcaacgaggaggacaacaaaaaacctgagcaaaca
gaaacgatggacaataattctaatgtagaaatagaagaaaagtttcagacatctggtgaa
agaagtgaaaagggtcttctggactcctgcaccttagtggagggactgcttttccccgtg
gagtattacgtcaggaccaccagacgcatgacgtcctcgcaaagccaacctgacattcaa
gcggtcctcttctcccagctgagcgtgggacgccagcgcaggagtcgaggccgcggcggt
ggagccagcggcagttcggggcgtcgcactcactcctccccagtgacttcatccacctct
cctctgaactcgtccttttctcagccttttggttcacctgcaggggaaggtccgatgaac
tctgatgccgggttttcacccacggtcacgacggcgcgtccaccgagaggcagaaggaag
agaagaggtcgaggccgagggagaccacagaccccaaaacgctcctttaactgggagggc
tcccagcccccagacgatgtcgccccatccctatcccagtctctccctaactctgaggaa
ccaaaccacgttttcagtccacaaggagctgtgaaggaactagacacaggtcggcatgtg
tcagccagcggctcagcttccctgtcgtcctcaggagttacagctgctcagctggaccgg
gtctaccccatttttatgaagagcttcaagaagaatacgccacctcagacaatcggaggc
cctcctgactggacacctctcctcctgcctcccacctcctctccagttcagacctccctg
ctctccctcccgtccccctccttgtgctcgctcatcgccagcctgaaaagccttgacgtt
caccaggattttcacctcccagacgagcacttcgcctccctgaaactccacaagcttcgg
caggtggcggtggagtcgggcatcgagcacttctccactccgtctgggaacacccgcagc
agcctccggcgctctgacctgagcgattcgtggaccgccgtccctctgctgctcacatcc
acgcccaccactacagattttctcctcccagatgaagatgtgcactccgacttccctcat
aggtcagaaaagctgagtagctccttcactaaggagcaaactgatatagcggaggacgtt
gagaacatccaaagctccccagactctccggtggtggtgcaggaagtcacggaaaacaat
ctactagaacctgaaacagcagagaaccagtgcatctctctgaactgtgaccacataaag
cctcataacaaactcactgacctacaaacgtgcagtaaacaagcttcacctggagagcaa
gcaggtgtttgtggaggaggctgtgctggacaggatcacagctctgtgccgcctgaagca
aaatccagatctgagactccaaacttggatcagtgcaggaaggaaagcccagaagaaccg
tataacgtgaacaccatttctcaagatgctggaaaaacagaggatgctgtgaatgtccaa
aaggattctgtggattctaaggaagcaaacctcagtgaggagaaccggcctgaaaaccat
ccccctgatcttccttcagctccttgtccttttctcagccctcacctgccctccactctg
atctccagccccgccctgccctctctaggtctcacccctcaccccgtcgctggcgtcctc
cccctgactccgtccccctctgctccttctctaagcttgcctcctcctcccagtccgtcc
acacagcctctccctcctcctgctctgtctccctgcccgtcccccaccgtagaatccacc
gtttgcccgactctgacctgcgctcaacgccgccgctcagggagtccgacgcccgccgag
aaacccacaatgagacacgcacacacactcaaggcggcagcaggagggctcctggtggac
gcgtgctcctttctccgagcttcaggggatgtgtgcgtcgcagctgcagggaagtgggcc
gtgtgtctgtggagccagacgtctgctgctgactggagcctcattcacacctggaccttc
agtgaacctgtgatcaacgtgtttcctgtcccggacgccgcggggctgatctgtgtgacc
ctcggtcagctggaaatcagagaagtgagagtgctctcgtgctccagcctcatgcagatg
ctgatctgcgagggcatcatccaggtggtggtgggcgtgtctaaatccagggtggtgact
tccgcccgcttcaccacaggctccaccctgcaggtgttcgctctgtccgacgacagcagg
tcacagaggtgtcagcctctcgcgtctctcggcgtttgcgtcagtgccctcgcgccggtt
gacggactccctgacgctctgatcgccaccgatgaagacggacgtctcttcatctggaat
ataaagaccggtcagctgcttcgtaaagtccagctggagcggcgtttatcccacacggcc
ggtctccgaggattctctgtgtctggagctttgctggtcctcctccagcacctgcccccc
agctcacctcaggacgaagacgaaaccaaagttggagggccttcagaagagtccgagaag
gccttgttctctttggtctgcattaaccccctgactggaagttctgttttggtcactcgg
ctgactccgcccccaacgtggcgcggcaggctgtgtgaggccgacgtcaaccagtcctgc
gtggcggcgctgagtacgagcggctgtgtgtgcgtgtgggagcttggcagagggggcggg
gctcaggtgctgaaggctccagagggggaggactggcagctggtccgctggggggacgag
gacgcgctggtgatcggacatcaaaacggagacgtgtctctgtacgtctgcagcgccgct
cagacctcattctgcctctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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