KEGG   Oenococcus oeni: OEOE_0427
Entry
OEOE_0427         CDS       T00408                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ooe  Oenococcus oeni
Pathway
ooe03030  DNA replication
ooe03410  Base excision repair
ooe03420  Nucleotide excision repair
ooe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ooe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OEOE_0427
   03410 Base excision repair
    OEOE_0427
   03420 Nucleotide excision repair
    OEOE_0427
   03430 Mismatch repair
    OEOE_0427
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ooe03032]
    OEOE_0427
   03400 DNA repair and recombination proteins [BR:ooe03400]
    OEOE_0427
Enzymes [BR:ooe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     OEOE_0427
DNA replication proteins [BR:ooe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     OEOE_0427
DNA repair and recombination proteins [BR:ooe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     OEOE_0427
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     OEOE_0427
   MMR (mismatch excision repair)
    DNA ligase
     OEOE_0427
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      OEOE_0427
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH HHH_8 Ish1 5_3_exonuc UPF0758_N MurB_C PTS_IIB
Other DBs
NCBI-ProteinID: ABJ56386
UniProt: Q04GN6
Position
413170..415224
AA seq 684 aa
MNPADQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALE
KAYPSLAMPDSPTQHVAAGNQTKNDSRGLQKVVHPVPMLSLGDVFSIQELLDWDLVTTKN
AGSQQKYNLELKIDGLAISLRYENGRLIQASTRGDGSIGENVTDNVKTITEIPKVLNEPL
TIEVRGEIYMRKEAFADLNQQRDEEGKTIFANPRNAAAGSLRQLDPKITAKRHLSSFIYY
TAQNDVLGVNTQSDVLERFRQLGFPVNSSNKVIDRMTEVKDYIDEYTIKRDNLPYGIDGV
VVKVNDLDVENELGNTVKIPRWSIAYKFPPEEALTVVRDITWTVGRTGVVTPTAIMDPVF
LAGTKVKRASLHNPDYLQEKDVRIGDTVTLHKAGDIIPEVGQVILKKRPADAQAYPIPVY
CPSCKSKLVHVQGEVALRCINPECPAQIKEGLIHFASRNAMNIDGLGPRVVEQLLSKNLI
RKISDLYALTESQLTTLDKFADLSSKNLIQAIDRSRQNSVERLITALGIRGVGAKAAKVL
AAHFKNLRNLQNAGAEEIAEIDGVGQVMADAIRQYFNSESVASLINELENFQVNFDYLTT
STVDEKNYFFNKRIVLTGKLIHWTRPQMQAWLEEHGANVSSSVSSKTDLLIAGSDVGSKL
ERANKLGIKVINEQDFINLSNAKK
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgaatccagcagaccagttcacaccaattgaagatttaacgttcacacaagctcaggcg
gaaatcagagatctttcggatgaattaaccaaatggggacgcgagtattacgaagaggat
aatccaagtgtcgaggattacgtttatgacgcccattacgcccgtctggttgctttggaa
aaggcttatccgagtttggccatgcctgattcgcctactcaacatgttgcagctggaaat
cagacgaagaatgattcccgtggtttacaaaaggtcgttcacccggttccgatgctgtct
ttgggggatgttttttcgattcaggaattgcttgactgggaccttgtgacaacgaaaaat
gccggatctcaacagaagtataatcttgaactgaaaattgatggtttggcaatttctttg
agatatgaaaacggaagacttattcaagcttcgacgcgtggggatggttctatcggcgaa
aatgtgaccgataacgttaaaacgattaccgagatcccaaaagtattaaatgagccgcta
acgattgaggttcgcggagaaatttacatgcgtaaagaagcttttgctgatttgaatcag
cagcgcgacgaagaaggaaaaacaatttttgccaatccaagaaatgcagccgccggcagc
ctgcgtcaattagacccaaaaattactgccaaaaggcatctttcctcctttatttattac
acggcacaaaatgatgttttgggcgtcaacacccagtcggatgttttggaacgtttccga
cagttgggttttccagttaattccagtaataaagtaatcgataggatgaccgaagttaaa
gattatatcgatgaatacacgattaaaagagacaacttgccttatggaatcgacggagtc
gttgttaaagtaaatgatcttgatgtggaaaacgagttgggcaatacagtcaaaatacca
cgttggtcgattgcttataaatttcctccggaagaagctttgacagttgttcgcgacatc
acttggacggtcggtcgaaccggagttgtcacgccaacagctattatggaccctgtcttt
cttgctggtacgaaagttaaaagggcaagtttgcataatcctgattatttgcaggaaaag
gatgttcgaatcggcgacacggtaactttacataaagccggtgatattatcccggaagtt
gggcaggtcatcttaaaaaagcggcctgctgatgctcaagcttatccaattccggtttac
tgcccttcttgtaaatccaaacttgtccatgtccagggcgaagtggctcttcgctgcatt
aatcctgaatgtccagcccaaattaaagaaggattgattcactttgcttcaagaaatgcg
atgaatattgatggattaggtcctcgggttgtcgaacagcttttatccaaaaatctgatt
aggaaaatttctgatttatatgccttaacagaaagtcaattaacgactttggataaattt
gccgatttatcatcaaaaaatttgattcaggcaattgatcgttcacgccaaaattcagtt
gaacgtttaataacggccttgggcattcgcggggttggtgctaaggctgccaaagtgctc
gcggcgcattttaagaatcttcgtaatctacaaaatgccggagcagaggagattgccgaa
attgacggtgttggtcaggtaatggccgatgcaattagacagtatttcaatagcgaatcg
gttgccagcttaattaacgaattggaaaattttcaagtaaattttgattatttgacgaca
agtacggttgacgaaaaaaattactttttcaataaaagaatcgttttaaccggcaaactt
attcattggacacgaccacaaatgcaggcttggcttgaagaacatggcgccaatgtttct
tcatccgtttcttcaaaaacagatcttttaattgcaggaagcgatgtaggtagtaaacta
gaaagagcgaataaattaggaataaaagtgattaacgaacaggatttcattaatttaagc
aatgctaaaaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (14)   
   Pfam (14)   
All databases (46)   

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