KEGG   Orcinus orca (killer whale): 101273956
Entry
101273956         CDS       T05247                                 
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
oor  Orcinus orca (killer whale)
Pathway
oor03013  Nucleocytoplasmic transport
oor03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oor00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101273956 (UPF3A)
   03015 mRNA surveillance pathway
    101273956 (UPF3A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oor03019]
    101273956 (UPF3A)
Messenger RNA biogenesis [BR:oor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     101273956 (UPF3A)
   mRNA cycle factors
    P-body specific factors
     101273956 (UPF3A)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 101273956
NCBI-ProteinID: XP_012389843
Position
18:complement(40263..93529)
AA seq 572 aa
MRSQKEGEGGPGLPVTTRGPSGKEKPSPTESHFRRESQRREPEAPVAWSSGCGGGAVEPR
EEKRTVLSKVVIRRLPPSLTKEQLEQQLHPLPAHDYFGLFTADLSLYPHLYSRAYINFRN
PDDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKTAKKKLKKKDTQAGSIEDDPEYKKF
LETYCVEEEKTNANPETLLGDIEAKTRELIARRTTPLLEYIKSRKLEKQRIREEKREERR
RRELERKRLREEEIRRRREEERCKRRAAEKQQKTAEKEIRRKLLKKSEKGEESSTEKPKE
RGEEIDTRGGKQELGPSCVVVKPRPLESSLQELREKSENDSDKEQRDVERRFQEKELEAQ
RYHLDDSRKHRAHYELDKFSGRSKEELKRGKGFTPDRGKKGSQDGGGPVGAAETPGREKS
EDELAPKKEDAGSKDRPGLQLYQPRGGIRARECDGRPPEEGRDGRRGEVEDSPGAGAEKS
EEAELLTAAQCHPNQERRRSEGLCCQACELASQTAPDTHSKDNPVLLSQALSPSALNISE
KEKLRNRLNYDRPAESHPLTKKSLEFKSTCAS
NT seq 1719 nt   +upstreamnt  +downstreamnt
atgcgctcgcagaaggagggagaggggggcccagggttgcccgttactacgcggggtccg
agcgggaaggagaagccgtcgcccacagaaagccacttccgccgggagtctcagcggcgg
gagcctgaagcgccagtagcctggtcctccggctgtgggggcggtgcagtcgaacctcgc
gaggaaaagaggacggtcctcagcaaggtggtcatccggcggcttcctcccagcctcacc
aaggagcagctggaacagcagcttcacccccttcctgcacacgattacttcgggctcttt
actgctgatctcagtctttatcctcatctctattcaagagcatacattaattttagaaat
cctgatgacatcctgctttttagagatcgttttgatggatatatcttcattgacagtaaa
ggcctagaatatcctgcagtggtagaatttgctccattccagaagacagccaaaaagaag
ctaaagaaaaaagacacccaagctggaagcattgaagatgatccagaatataagaagttt
ttagaaacttactgtgtggaggaggagaaaactaatgccaatcctgaaactcttctgggg
gacatagaggcaaagacaagagaacttattgctagaagaaccacacctcttttggagtac
attaaaagtagaaaattagaaaagcagagaattcgagaagaaaagcgagaagaacggagg
aggagggagttggaaaggaagcgcttacgggaagaagagataagaaggagaagggaagag
gagagatgtaagaggagagcagcggaaaaacagcagaaaactgctgagaaagaaataagg
aggaagcttctcaagaaatcagaaaagggagaggagtcaagcactgagaagccaaaagaa
agaggagaggaaattgacaccagaggtgggaaacaggaactcggtcccagctgtgtagtc
gtgaagcccaggcccttggagagctcgctgcaggagctcagggaaaagtcagaaaatgac
agtgataaagagcaaagggacgtggagagaagattccaagaaaaagaacttgaagcacaa
agataccacttggatgacagcagaaaacatagagctcactatgagttggataagttttca
ggaagaagcaaagaagagctgaaaagggggaaaggattcaccccagaccgagggaagaag
gggagccaggatgggggcggccctgtgggggcagcagagacaccaggaagggagaagagt
gaagatgagctggcacccaagaaggaggacgcgggaagcaaggaccgaccaggcttgcag
ctgtaccagcccagaggtggcatccgagcccgtgaatgtgatggaagaccccctgaggag
ggccgtgacgggaggaggggtgaggtggaagattcaccaggggctggagctgagaagagc
gaagaggcagagcttttgacagctgcccaatgtcatccaaatcaggaaaggagaagatct
gaaggattatgttgtcaggcctgtgaactagcaagtcaaactgcccctgacacacattca
aaggataatccagtacttctttctcaagcactttctccatctgccctaaacatcagtgag
aaagagaaactgagaaacagactaaattatgacaggccagctgaatcccaccccctcaca
aaaaagtcacttgaatttaaaagcacctgtgcttcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (12)   
   RefSeq(pep) (12)   
DNA sequence (17)   
   RefSeq(nuc) (17)   
Protein domain (1)   
   Pfam (1)   
All databases (51)   

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