KEGG   Orcinus orca (killer whale): 101277418
Entry
101277418         CDS       T05247                                 
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
oor  Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:oor00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oor03041]
    101277418 (YTHDC2)
Enzymes [BR:oor01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101277418 (YTHDC2)
Spliceosome [BR:oor03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    101277418 (YTHDC2)
SSDB
Motif
Pfam: YTH HA2_C Helicase_C OB_NTP_bind R3H DEAD Ank_2 AAA_19 HA2_N nSTAND3 Ank AAA_22 ATPase PhoH AAA_7 AAA_16 AAA_29 Ank_4 T2SSE UvrD-helicase SRP54 ResIII AAA_23
Other DBs
NCBI-GeneID: 101277418
NCBI-ProteinID: XP_004267508
Position
3:complement(92538398..92607915)
AA seq 1429 aa
MSRPSSVSHRPSAPGGGGGSGPVPCGPAGGGRAKGLKDIRIDEEVKIAVNIALERFRYGD
QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGASRYLTVKKKDGSETAHAMMTCNLT
HNTKHAVRSLIQRFPVTSKERTELLPKTERGNVFAVEAENREMSKTSGRLNSGISQIPVK
RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP
CRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTL
MAGDSSLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKYPTLKLVLSSAALDVNLFMRYF
GSCPVTYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREERQQTTLTEWYSAQEN
TFKPESQRQRAVPNVTEENDLLDDGGDAIFSQLTEKDVNCLEPWLIKEMDACLSDIWLRK
DVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHIKASNG
WMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFD
DEKVDLDLIMHLLYNICHSCDSGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFM
LHSNMQTSDQKKILKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFV
TMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHT
KLLAPVNCPIADFLMKAPEPPPTLIVRNAVHMLKTIDAMDAWEDLTELGYHLADLPVEPH
LGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMAL
LRAFQAWQKARSDGWERAFCEKNFLSQATLEIIIGMRTQLLGQLRASGFVRARGGGDIRD
VNTNSENWAVVKAALVAGMYPHLVHVDRENVVLTGPKEKKVRFHPTSVLSQSHYKKIPPA
NGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLIFCGPARLASNALQELSSF
RADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRA
PSKPWSQVDDATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRK
ISADIEFSDESTTAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVNTDSNNY
QSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTSSNERKLN
RAFWESSMVYLIFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLSLGEKTTTD
NT seq 4290 nt   +upstreamnt  +downstreamnt
atgtccaggccgagtagcgtctcccaccggccgtcggctcctggagggggcggcggcagc
ggcccggtgccgtgtggccctgcgggaggcggccgggccaaggggctgaaggacattcgt
atagacgaggaggtgaaaatcgcggtcaatatcgctctggagcgtttccgatacggggac
cagagagaaatggaatttccttcttctttgaccagtacggaaagagcctttattcatcga
ttgagtcagtctcttggtttggtttctaaaagtaaaggaaagggagcaagtagataccta
actgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgact
cataatacaaaacatgctgttaggagcctaattcaaagatttcctgtcaccagtaaagag
cgtactgaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaac
cgggaaatgagcaagacaagtgggcgactcaacagtggcatatctcagattccagtgaaa
agaggagaatctgaatttgattctttcaggcagtctctgccagtgtttgagaaacaagaa
gaaattgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtct
ggaaagactacacagattcctcagttccttttagatgattgctttaaaaatggtatcccc
tgccgtatattttgtactcaaccaagacgattagcagctattgctgtggctgaaagagtt
gctgcagagagaagagaaaggattggtcagacaattgggtatcagatccgtttagaaagc
agggtttctccaaagacacttctgacattttgcaccaatggggtactgcttcgtactctg
atggcaggagatagttcattgtcaactgtgacacatgttattgtggatgaagtacatgaa
agggatcgatttagtgattttttacttacaaagttaagagatttgttgcagaagtaccca
actttgaaactagttctttctagtgctgccttagatgtaaatctttttatgagatatttc
gggagttgtccagtgacatacatacagggaagaccatttgaagtaaaagaaatgtttctg
gaagacattttaagaactactggatacacaaacaaagaaatgttaaaatacaaaaaggaa
aaacaacgagaagaaagacaacaaaccacacttacagaatggtactcagctcaagagaat
actttcaagcctgaatctcagagacagagagctgtcccaaatgtaactgaagaaaatgat
ttattggatgatggtggtgatgccatcttcagtcagttgacagaaaaagatgtgaattgc
cttgaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcgtaaa
gatgttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgtggat
tacagacatagtgaaaccagtgcaacagctttgatggttgctgcaggacgaggtttttca
agtcaagtagaacagttaattagtatgggagccaatgttcatattaaagcatcaaatggc
tggatggctttagattgggctaaacactttggacagactgaaattgtggatcttctagaa
tcttacagtgcttcattggaatttggaaatttagatgaaagttctttggttcaaacaaat
gggagtgatctcagtgcagaagacagagagctcctgaaagcttatcatcatagttttgat
gatgaaaaagtagacttggatttgatcatgcatcttctatacaatatctgccatagttgt
gattctggtgcaatattgattttcctgcctggatatgatgaaattgttggtctgagggat
cgcatcctgtttgatgacaagcggttcgctgacaatactcataggtaccaagtctttatg
cttcattcaaatatgcaaacatccgatcaaaagaagatattaaaaaacccacctgcaggt
gttcgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgacgtt
gtctttgttattgattctggtaaagtgaaagagaaatccttcgatgcactgaattttgtt
acaatgttaaaaatggtgtggatttccaaagctagtgccatacagcgaaaaggcagggca
gggcgatgcagacctggaatttgtttccggctgttcagtagacttcgattccagaatatg
ttggaatttcagactccagaacttttgagaatgccattacaggaactttgtttacatacc
aagctcttagccccagttaattgtcctattgctgatttccttatgaaagctcctgaacct
ccaccaactttaattgtaagaaatgctgtgcacatgcttaagacaatagatgcaatggat
gcatgggaagatctcactgaacttggatatcatttggctgacttgccagtagaaccacat
cttggtaaaatggtcctatgtgctgtggtgttaaagtgtctggatcccatccttacaatt
gcctgcacactagcctatcgagatccgtttgtcctgccaacacaggcctctcaaaaacgt
gcagctatgctttgtaggaaacgtttcactgcagggactttcagtgaccacatggcactt
ctcagagcattccaggcatggcagaaggctcgaagtgatgggtgggagcgagccttttgt
gaaaagaattttctttcacaagctactctggaaataatcataggcatgagaactcagttg
cttggtcaacttagagcatcaggttttgtgagagcacgaggtggtggtgacattcgagat
gttaacacaaattctgagaactgggctgtcgttaaagctgcattggttgcaggcatgtat
cctcatttagtccacgtggacagagagaatgtagtattgacagggccaaaggagaaaaaa
gtacggtttcatcccacttcagttctcagtcagtctcactataaaaagattcctccagct
aatggtcaagctgcagcaattcaggcactgcccacagattggcttatttatgatgaaatg
accagagctcatagaatagctaatattagatgttgttcagcagtgacacctgtcactgta
ttgatattttgtggaccagctaggttggcaagtaatgctcttcaggaactttcatctttt
cgagcagatggtattcctaatgacagtagtgatagtgaaatggaagacagaactactgct
aatttggcagctttaaaacttgatgagtggctcaatttcaaactagagccagaggcagcc
agtttattgctgcagcttagacaaaagtggcatagcttatttttacgccgaatgagagct
ccatccaaaccttggtcccaagttgatgatgctaccataagagcaattatagctgtttta
agcactgaagaacagtctgcaggtttacaacaaccatctgggattggccaaaggccaagg
cctatgtcttcagaagaacttcctttggcatcatcttggaggtcaaataatagtaggaaa
atttcagcagatattgaattttctgatgagtctactactgcagaaagagtattgatgaaa
tctccatctccagcactgcacccacctcagaagtacaaagatagaggaattttacatcct
aaacgaagcactgatgacaggtcagatcagtcttctgtgaatacagacagcaataattat
caaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatctgagaaacctt
gaaatttctcaacagaagggtatctggtctacaacctctagtaatgagaggaagctaaac
cgagccttttgggaaagcagcatggtttacttgatattttctgttcaaggatctggacat
ttccagggattttctagaatgtcttctgagataggaagggagaagagtcaggactggggt
tcagctggactaggaggagtgtttaaggtggagtggatacgaaaagaaagtcttcccttt
cagtttgcacaccatttactcaatccttggaatgacaacaagaaagtccagataagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
tcattgggagaaaaaaccacaactgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (23)   
   Pfam (23)   
All databases (57)   

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