KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4327336
Entry
4327336           CDS       T01015                                 
Name
(RefSeq) probable RNA-dependent RNA polymerase 4 isoform X1
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:osa03036]
    4327336
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     4327336
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     4327336
SSDB
Motif
Pfam: RdRP
Other DBs
NCBI-GeneID: 4327336
NCBI-ProteinID: XP_015624482
UniProt: Q5QMN4
Position
1:complement(5307412..5324506)
AA seq 1183 aa
MNPHGGGNQMREPALPAAVGAELERLEARLGQLACAEARRQLAELGEPAAARVLRAIGEA
RQVRTLSGFIRHMANQERMKRNARGIPTAHSAACISGPCREEESISTPLYYNEVQMDAQT
PNDMVEVGSPNQQMPLRLHDNGGSVGHIARVVPDLANPAVGSPYGRISSVLLQNQNCVEG
YTPSRGMVSPASNQVGSPGHRMPSGLQRHMEIDSPIQPIVSTPERVSTPSPVRDLSRCVE
NMAGPSGSPPCPIWVMPQIPPAICPDTTNVLREVVSPQMLALGELEFRKIFMIFAYLSWN
KKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDS
GPGMSKVYHCNVEIRGGTVVKIFKGPYIENRRTHLQKVLGDDNVLVVKFMEISSDTETDL
STYLEHYHKVAEEGIVLGLRCYRFFLYKDGGKENKMKEENREEENKKCTSSVRCYFVRTE
SGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEVLVKL
IDDEPCLDEHGKEVFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDIVDCAASK
LMGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQS
VNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMEL
LQTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGIPLEESYLQSRLDFLSLLER
KGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVL
KATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKP
WVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVS
LDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPSYHSSSIL
GKIYDKAGDPKPLRSDNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEE
ADEEEKKIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVAR
CGFAWKVAGRALCHFYTVKNEGNAVVCSLQLLRNFRFTKKYRK
NT seq 3552 nt   +upstreamnt  +downstreamnt
atgaatccccacggcggtgggaaccaaatgcgcgagccggcgctcccggcggcggtcggc
gcggagctggagcggctggaggcgaggctgggccagctcgcctgcgcggaggcgcggcgg
cagctcgcggagctcggcgagccggcggcggcgcgggtgctccgggcgattggggaggcg
cgccaggtccgtacgctctccggcttcatcaggcacatggcgaaccaggagaggatgaag
cgcaacgcgcggggcatccccaccgcccacagcgccgcatgcatctccggcccctgccgc
gaagaggaatctatatccactccactgtactacaatgaggttcaaatggatgctcaaaca
cccaacgacatggtggaggttgggagtcccaaccaacagatgccgctccgtttgcatgac
aatggcggttctgtcggacatattgctcgtgtggttccggaccttgctaacccagcagtt
gggagcccatatggtcgaatatcttctgtgctgctgcagaaccagaactgcgttgaaggt
tatacgccttcccgtggaatggtttctcctgcgtccaaccaggttggtagccctggccac
cgcatgccatctgggctgcagagacatatggagattgacagccccatccagccgatcgtt
tctactccagaaagagtttccaccccgagccctgtgcgggatctatcaagatgtgtcgag
aatatggctggcccctcaggaagtcctccatgtcccatttgggtgatgccgcaaattcct
ccagcaatctgtcctgacacgaccaatgtgttgagggaggtagtgagccctcagatgcta
gcgctgggagagttggagttcaggaagatatttatgatttttgcttatctttcctggaat
aagaaaggagtaaagcctccattatctacaccaaaaagtagtaagatagaagatgtcctc
tccgtggacagtatcagatccttgaagtcaatgtccatggctcaatttgagtcacgaatc
tggagcacatttggtcacgataatatatcatcttcagatagagcaaagaaccttgattct
ggtccaggtatgtcaaaagtctaccattgtaatgttgagataagagggggtacagttgtc
aaaattttcaagggaccatatattgagaataggaggactcatcttcagaaagttcttggt
gatgataacgtccttgtagtaaaatttatggagatatcttcagacactgagactgatttg
tctacctatttggaacactaccataaggttgctgaagagggtattgttttgggtttgcgc
tgctatcgatttttcctttacaaggacggcgggaaagagaataaaatgaaagaagagaat
agagaagaagaaaacaagaaatgtacttcatctgtcagatgctactttgttcgcactgag
tctgggtggaacatggatgaaccttacatactctctggcagaacgattggtcaggctcgt
gacctattcatgcacatccgtactgttctcaccttggcgaaatatatgctcaggtttgct
ttgatagtctccaaaactatcacattggatgttgatttatcagaagttcttgtcaaactc
attgatgatgagccttgcttggatgaacatggcaaagaagtttttagagatggggagcgg
ttgatacatactgacgggacaggccttatatctgaagatttggctcagaaatgcacttat
agtaactcaaagggaaaattgttggagccacaggacattgtggattgtgctgcaagcaaa
ttgatggggtctaacaacaccactgaatatcctcttcttattcaactccgcctgttctac
aatggatctgctgtaaagggaacagtcctagttgacaagcggcttcctcctaggactata
catatccgaccatcaatgttaaaaataaaaacttatccagaattatctggtgtccaatct
gtcaactcattggacatagtctctgcacgaaatgccaagaaaagtctatctggggttcag
tccgtgaattcttttgaaatagtctctacaagcaatcgatcaggaaggacattcacatca
aataatttaattgcattacttcactatggaggagttccagaagaattctttatggagctt
ctgcagactgcgattgaagaggctgacaatgctcgttttgattatgctggcgcactgaac
attgcattcaactatgctgacatggaagattcaatgccagcacggatgattctttccgga
atcccactagaagagtcgtacttgcaatctaggctggatttcttgtctctactggaaaga
aaaggaatcaagaatggaaagataccaattgatgactgctattatttgatgggtactgca
gaccctacaggaaaacttggacctaatgaagtctgcgtgatacttgattatggccaagtt
tctggagatgttcttgtgtataaatatcctggcttacatcctggtgatatacatgtcttg
aaggcaacatatagtagcgacatagagaaggttgtgggaaattctaaacatgcgatactc
ttccctactactggacaacggtctttggctgatgagatggccaatagtgattttgatggt
gacatctactgggtctcattaaacccaaagctgttagaacattttaaaccttcgaaacca
tgggttccagctattacaccaaatgggaccaagcaaaagggacccgaggattttaatgaa
tccgagcttgaaagagtgctatttcatgagttcttgaaaacaagatttgcacctagttat
gcgcgtgctacggcagctactaactggttagtatatatggatcggctattaactgtttca
cttgacgaaagtgaaaagaaactaattgagaaaaagatgctcaagttagttgacctttat
tatttggctttggatgctccaaagatggggaacaaggtcaatattccacgtgatctaatg
gtaaaacaatacccccacttcatggaccgcagtccttcgtaccattcgtcgtccatactt
ggaaaaatctatgataaagcaggtgatccaaaaccgctgcgatctgataatgttcaacca
accagtatatcatcgctcccatgtttcgcggagagagacgtgcctccagcaatcaagcaa
ctctggcaacaccgctataacgagtacttggctgatagttcacttctctatgccgaagag
gcggatgaagaagaaaagaagataaagtttcaggaactctatgaaaagtacaagcatttg
ctctacggtgcatctgaatttgaagagacaccgagggacctcgacgacgtgttctccgag
gcctgtgcaatctaccagatcgcgtatgagaaagcacggtctgccaacaacgtcgccaga
tgtggcttcgcttggaaagttgccggccgtgcattgtgccatttctacacggtcaagaat
gagggtaacgctgtggtttgctcgctccaacttctccgcaacttcagatttaccaagaag
taccgcaagtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (1)   
   Pfam (1)   
All databases (59)   

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