KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4345621
Entry
4345621           CDS       T01015                                 
Name
(RefSeq) THO complex subunit 4D isoform X1
  KO
K12881  THO complex subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4345621
  09122 Translation
   03013 Nucleocytoplasmic transport
    4345621
   03015 mRNA surveillance pathway
    4345621
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4345621
   03041 Spliceosome [BR:osa03041]
    4345621
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     4345621
    TREX complex
     4345621
Spliceosome [BR:osa03041]
 Complex C
  Other components
   EJC/TREX
    4345621
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    4345621
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 4345621
NCBI-ProteinID: XP_015649900
UniProt: Q0J5K6 Q7EY69
Position
8:complement(20578930..20583507)
AA seq 286 aa
MAYYARRGGDRVSGGGRVQGGGGGGGGGGRGGYVLRGRSGMPPRGPLGLGVNSRPSARTI
AKSFSRTKDMTWRPDLFSDSMAASGIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFA
VHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVV
GASNGRPTRTVVMTPEIGQRGSGSSSRPTGPTVNRYNRGAFQAGRGRGRGRGRAPFQSQF
QGRGTGSVRGRGQFQGRGRGRRQAGKTADELDKDLETYHAEAMKTD
NT seq 861 nt   +upstreamnt  +downstreamnt
atggcgtattacgccaggaggggtggggatagggttagtggtggtggccgtgttcaaggt
ggtggaggtggtggaggtggtggtgggagaggtggatatgtgctgcgtggaagatcaggg
atgcctcctcgagggccccttggcctcggggttaactcgcggccatcagcgcgcactatt
gctaagtcttttagcagaaccaaagacatgacctggagacctgatctgtttagtgatagt
atggcagctagtggaattgaaactggtacaaaattgtacatttcaaacttggactatggg
gtttccaatgaggatataaaggagctgttttcagaagttggtcacttgaagcgctttgct
gttcactttgatggttatgggcgcccaaatggcacagcagaagtggtgtttactaggaga
agtgatgcaattgctgcattgaaacgttacaataatgttctgcttgatggtaaagctatg
aagatagaagttattggaagtgacttaggtttgcctatgacacctcgcataaatgtggtt
ggggcttctaatggcagacctacaagaacagttgttatgacgcctgaaattggccagcgt
ggcagtggttccagcagtagaccaacaggtcctacagttaatagatataaccgtggtgcc
ttccaagctggccggggccgaggccgtggcaggggtcgtgccccattccagtcccagttc
cagggccgtggcactggcagtgtcaggggccgtggtcaattccagggccgtggtcgcgga
aggaggcaagctgggaagactgcagatgagctggacaaagacctggaaacttatcatgct
gaggcaatgaagaccgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

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