KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4347066
Entry
4347066           CDS       T01015                                 
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4347066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4347066
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4347066
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4347066
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 4347066
NCBI-ProteinID: XP_015611819
UniProt: Q6EQ06 Q6EQZ6
Position
9:14929162..14930786
AA seq 280 aa
MATPAAEKPDGVEIREVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVVCRPLGTFKSNA
DFNYATLKANVDMLKLIQLGLTFSNEHGGLPSLGPEGRPCVWQFNFRGFDPRTDVAAADS
IDLLRRSGIDFTRHSADGADARRFAELLMSSGVVMNSEVRWVTFHSGYDFGYLLKLLTGT
YLPDTITGFFDLIRIYFPVVYDIKHLMRFCNSLHGGLNKLAELLDVERVGICHQAGSDSL
LTALSFKKLKEAYFNGLTEKYAGVLYGLGTEGGETSSAAH
NT seq 843 nt   +upstreamnt  +downstreamnt
atggcgacgccggccgccgagaagcccgacggggtggagatccgcgaggtgtgggaggac
aacctcgaggccgagttcgcggtgattcgggagatcgttgacgacttcccgtacgtcgcg
atggacacggagttcccgggcgtcgtctgcaggccgctcgggacgttcaagtccaacgcc
gatttcaactacgcaacgctcaaagccaacgtcgacatgctgaagcttatccagcttggt
ttaaccttctcgaatgagcatggtgggctcccgtcgcttggccccgagggtcgaccttgt
gtttggcagttcaactttcgtggcttcgatccccggaccgacgtcgctgctgcagattcc
attgacttgctccggcgcagcggtattgacttcacccgtcactcggctgacggcgctgat
gctcgccgcttcgctgagcttctcatgtcgtcgggcgttgtgatgaactctgaggttcgc
tgggttacgttccatagcggatacgactttggctacttgctcaagttgctcaccggcaca
tacctgccagacacgataaccggattcttcgacctcatcaggatatatttccccgtcgtg
tatgacatcaagcacttgatgcggttctgcaacagcctccatggtgggctgaacaagctt
gccgagctgcttgatgttgagcgcgttggaatttgtcatcaggctggttccgactcgctg
ttgaccgcgctgtcattcaaaaagctcaaggaagcatacttcaatgggttaaccgagaag
tatgccggtgtgttgtatggtcttggcacagaaggtggggagacctcctctgctgctcac
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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