KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 9268581
Entry
9268581           CDS       T01015                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9268581
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    9268581
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     9268581
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    9268581
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    9268581
SSDB
Motif
Pfam: AAA_30 Helicase_C AAA_22 nSTAND3 AAA_19 nSTAND1 AAA_16 Viral_helicase1
Other DBs
NCBI-GeneID: 9268581
NCBI-ProteinID: XP_015629490
UniProt: Q10N49 C7J0I4
Position
3:9699177..9700391
AA seq 404 aa
MAGSNQEHEAESWPPAIYHQMPAILEYLEDHRVVVVSAAPGSGKSSVLPRCLAESGYGPV
LCAQPRHLAAFVAMAKVGEEWDSDIEFTTTRQLLDRFSSPAPVLAGYGAVVIDEAHDRTL
GTDVLLGMVKAALATGTTMGGRCKVVVCTAGGPADGMLSAFFGGAPVVSIPRAAHQVEVR
YSRGPVLDMAAAVADEVAAIHASQPPGDVLAFLPENADIIGVHARLLGLPVPGLAVRYVH
DNLPAELIDIMLINSPVPDGRRRVVLATDVAETAVLVHGITYVVDTGLVSEQPPVRISKE
AAAARAAIAGFSGPGRCHRLYQPEEYDDLDEHTIPHIRQDGAAVRFALMVKRHAADGIPG
FEIFDPALEPAVLKNVFGQLVNGGYLDKLGNLSDKGEREAYDED
NT seq 1215 nt   +upstreamnt  +downstreamnt
atggccggctctaaccaagagcacgaggctgagtcgtggcctccggcaatctaccaccag
atgccggcgatccttgagtacctcgaagaccaccgtgtcgtcgtcgtctccgccgcgcct
ggctccggcaagtcgtcggtgctcccccggtgcctcgccgagagcggatacggcccggtg
ctctgcgcgcagccccgccacctggccgcgttcgtggccatggcgaaggtcggcgaggag
tgggattcggacatcgagttcacgacaacccggcagctcctcgacaggttcagctccccg
gcgccggtcctcgccgggtacggcgccgtcgtcatcgacgaggcgcacgaccgcacgctc
ggcaccgacgtcctcctcgggatggtcaaggccgcgctggcgacggggacgacgatgggc
ggccgatgcaaggtggtggtctgcaccgccggcgggccggccgacggcatgctctccgcc
ttcttcggcggcgcgccggtcgtctcgatcccgcgcgcggcgcaccaggtcgaggtgcgg
tactcgcgagggcccgtgctcgacatggcggccgcggtggccgacgaggtggcggccatc
cacgcgtcgcagccgcccggcgacgtgcttgcgttcctgccggagaacgccgacatcatc
ggcgtccacgcgaggctgctcggcctgccagtgccagggctggccgttcgctacgtccac
gacaacctcccggcggagctcatcgacatcatgctgataaactcgccggtgcccgacggc
cggaggagagtcgtgctggccaccgacgtggccgagacggccgtgctggtccacgggatc
acgtacgtcgtcgacaccggcctggtgtcggaacagccgccggtgaggatctcaaaggag
gcggcggccgcgcgggcggcgatcgccggattctcggggcccggccgctgccaccggctc
taccagccggaggagtacgatgatctcgacgagcacaccatcccacacatcaggcaagat
ggcgcggccgtcaggttcgcgctcatggtcaagcgacatgccgctgacggcatcccgggg
tttgagatttttgacccggcattggaaccggcagtgctgaagaatgtctttggtcagctt
gtcaacggtggctacttggacaagcttggaaatctgtctgacaagggggagagagaagca
tatgacgaagactag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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