KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 9272729
Entry
9272729           CDS       T01015                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9272729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    9272729
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     9272729
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     9272729
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT Glyco_hydro_84_hel CSM2
Other DBs
NCBI-GeneID: 9272729
NCBI-ProteinID: XP_015614203
Position
10:complement(21884562..21903712)
AA seq 2413 aa
MIPFNSAVAEDVRSLVQGVDDSTFDSTHRELCQLADCSPDGCSLLLQVCLDEVLLNADVA
KSSRLKPELLSTVFKYCLDKPYFSTSFCEALKTVHVSDMFLVKLSNELNLSAGERVGVGL
ALSDSGNLGLITKGQKFSIAEIEEICANPAHVLTNDQIHDIVVFLHQTDGLSKHMDSFTN
IISLLNVKEMPFYVPAPIKEGNARPTISSRHMELYTGSLDDDFDSLLSEIGKEISMADII
TELGYGCTSDIAHCKEILSLFEPLDDMGISKLLGAVVCTHVGLGEAHNTYSTFMSAVGNS
QPSDSSQFTAWNIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYSRAC
KDPFPLHAVCGSLWKNTEGQLSFLKHAVAAPTDTFTFKHCSRKMVFPEFANRMQGNQAWY
CLDLLEVLCQLAELGYATMVRSMLDYPLIHCPDVLLLGVSHINTPYNLLQYEVLSCVFPM
ILKDTTYSSLMNSLWHVNPYLTLRGFVDSHSDANCLLRTVEICQDLTILSAVLDSTPFAF
SIKLATVAFRQSHSNLEKWLVEKLTAQGETFLEECVKFLKEIMSNTTYEAAEGAVQQPQV
MILDICRESCPLIIKVLQSHSGQLLSNQLVEELRRVEAVHESRNHGVVGRDAPTSEGGPD
DIEAQANIYFHQMFSGQISVDAMVQMLARFKESTNKRELSIFNCMVSNLFEEYKFFPKYP
DTQLKLAAVLMGSLIKHQLVAHLGLGIALRSVLDALRKSIDSKMFMFGTTALEQFMDRLI
EWPQYCNHILQISHLRATHAELVAAIERVLAKISSSQNEPNVGSMLSADQHGSSSIGNME
ASEASWQLINPTPTQLERSHQQRHQGFLGERSKGSTNIIQAKNILSSGQMPLASSPGDLA
VNLKAATTPSSQASPHHSTTVSAPLQPTGFLRSRSSAPSGIRQPSFTTGFGAALNIETLV
AAAERRDTPIEAPPSEVQDKIFFMINNISTSNMEAKAREFNEVLQEQYYPWFAQYMVMKR
ASIEPNFHDLYLKFFDKVNSKSLNKEMVKATYENCKVLLQSDLIKSSSEERSLLKNLGSW
LGKFTIGRNQTLRAKEIDPKILIIEAYERGLMIAIIPFTSKILEPCQSSIAYRPPNPWTM
GILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKD
VSASQAPVVAEVSSGVMPTINHVEPQPEINSTSRATSLPNMLSQYAAPLRLPTNNMVEDD
KSALIMPEQVSSLGLSQVSPSQTPSLSSSSFSLSQLIAAIPRADIYFRINEKLSSFGSLQ
YSKIMDMALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTL
AGSLAHVTSKEPLRVALSSHLRSLIQGITNNTESTEQIMLILVNDNLDLGCALIETVATR
KAVEMIDGEIKQPFSQLRRQKELLGSAYYDAFPYTQGLKRVPDALRPKPTGHLSAAQRRV
YEDFITVWHSQSSQNAGGSATATAMAVAPSNSSVPRVYSPNSALTDSSSFSSHFASASQT
TELVHEESDRNAHLSSLSSKIGASDTSTQVIGTTNVASVFPPMVPNDLPVGEPTTTNKDL
VTSAPLSPTTAVDRMGSVFVEPLNTSDALEMYQQVSQKLDTLIAKDGKDAEIQSVIAEVP
DILLRCVSRDEAALAIAQKVFRSLYDNASNSNYVTWLLAALVAIRDVCKLVVKELTSWVI
YSDEDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESI
SIAEVYNVVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKVLSGRPLVNK
EENNANDVAFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVKLQQDGLLKGDDLT
DRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKYSSVDI
GPSKGSLFNKILSVIVRIIQRDAEEKKVSFNPRPYFRLFINLLSELTTSDLHHDSANFQV
LTAFANAFHVLQPLRVPAWSFAWLELVSHRSFMPKLLLCNAQKGWPFFQRLLVDLFKFME
PYLRNAELGQPIHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAF
PRNMRLPDPSTPNLKIDLLAEISIPPRIMSDVDGALKSKQMKTQVDEYLKRPDGSFLTDL
KQKLLLPQNEANIAGTRYNVPLVNSLVLYVGMQAVQQLQLNKMNASASAQQMNQSQLDVQ
IETATELFRNLVMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFSEANQEIVQEQ
ITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWARSFTRCAPEIEKLFESVARSCGGK
GGDDGVGLPDGGH
NT seq 7242 nt   +upstreamnt  +downstreamnt
atgatccccttcaattccgccgtagccgaggatgtccgctccctggtgcagggcgtggac
gactccaccttcgactccacccaccgcgagctctgccagctagcggactgcagtcctgat
ggatgcagtttgctgcttcaagtttgtttggatgaagtgctgctgaatgccgacgtggca
aagagctctcgattgaaacctgagctcttatcaactgttttcaagtattgtctggataaa
ccatacttcagcaccagtttttgtgaagcactgaagacagtacatgtcagtgatatgttc
cttgtaaaattgtcaaatgaacttaatctatctgctggagagagggttggagttgggctt
gccctatcagattctggaaatctaggcttgattacgaaagggcaaaagttctcaatcgct
gaaatcgaggagatatgtgcaaatccagcccatgttttaacaaatgatcaaattcacgat
attgttgtgtttcttcaccagactgatggcctctcaaagcatatggattctttcactaac
atcatctccctattaaatgtcaaagagatgccattctatgttcctgccccaattaaggaa
ggcaacgctcggccaacaatttcttcaaggcacatggaactatacactggtagcttggat
gatgattttgattcccttctatctgaaattgggaaagaaataagcatggctgacatcatt
actgaattaggctacgggtgtacttcagatattgctcattgtaaagaaatactgtcacta
tttgagcctcttgatgatatgggaatctctaagttgcttggagcagttgtttgcactcat
gttggtcttggtgaagctcataatacatattcaacgttcatgtcggccgttggcaacagc
caaccaagtgactcatctcaatttactgcatggaatattgatgttctcgtggattcaatt
aatgaaattgccccaagaactaattggattactgtagtggaaaatcttgatcatgagggt
ttctgtatccctgatgaagcggcattttgtttgctgatgtctatatattctcgggcctgc
aaggatccatttcctcttcatgctgtctgtgggtcactgtggaagaatacagaaggacaa
ttatcattcttgaaacatgcggtggctgcgccaactgatacatttacattcaaacattgt
tccaggaagatggtatttccagaatttgctaaccgcatgcaaggcaatcaggcttggtac
tgcctggaccttctagaggttttatgccaacttgctgaacttggctatgcaacaatggtt
cggtcaatgcttgactacccactgattcattgccctgatgttttacttcttggtgttagc
cacatcaatactccatataatctcctccagtatgaagtattgtcttgtgttttccctatg
atactgaaggacactacatacagtagtcttatgaactctctctggcatgtcaacccttac
ctcactcttcgtggatttgttgattcacattccgacgcaaattgccttctcagaactgtt
gagatatgtcaagacctaacgatcctatccgcagtccttgattccaccccgtttgcattt
agcatcaagcttgctacagttgcttttaggcaaagtcatagcaatcttgagaaatggttg
gttgaaaagctgactgctcaaggagagacttttcttgaggaatgtgtgaaattcttgaag
gaaattatgagcaacacaacttatgaggctgcagaaggtgctgtccaacaacctcaagtg
atgattttggatatttgccgagaatcttgccctctaattataaaggttctgcaatctcac
tcgggccagctgttatctaaccaacttgtggaggaactaaggagagtggaagcagtgcat
gaatcaaggaatcatggtgttgtaggaagggatgcccctacttctgagggaggtcctgac
gacattgaagcacaggcaaatatatattttcaccagatgttttctggacagataagcgtt
gatgctatggtacaaatgcttgcacgtttcaaagaatctacaaacaagagggagctatca
attttcaattgcatggtttcaaatttgttcgaggagtacaaattcttcccaaagtatcca
gatacacaacttaagttagcagctgtgctcatgggatctctcattaagcatcaacttgtg
gctcacctgggacttggaattgctctacgtagtgttcttgatgccttgcgtaaatctatc
gattcaaagatgtttatgttcggaacaacagcgctagagcagtttatggatcgtctaatc
gagtggccacagtactgtaaccatatattgcagatatcacatcttcgtgcaacacatgcc
gaattagttgctgcaattgaacgagtgctcgccaagatatcgtcaagtcaaaatgagcca
aatgtaggcagcatgctttctgcagatcagcatggttcatcatctattggaaatatggag
gcttctgaagcatcgtggcagctcatcaatccaactccaacacaacttgaacggtcacac
caacagaggcaccagggtttccttggggagaggtccaagggctctacaaacatcattcaa
gccaaaaacattctttctagtgggcaaatgccacttgcttcatcacctggtgatttggct
gtcaatctaaaggctgccacaacaccatcgtcacaagcttctcctcatcattctaccact
gtatcagctcctttacaacccactggctttctgcggtctagaagttctgctccttcaggc
attcgacaaccttccttcaccacaggatttggagctgctctgaatattgaaactctagtt
gccgctgcagaaagaagagatacaccgattgaggcccctccttctgaagttcaagacaag
attttcttcatgatcaataatatttccacttccaatatggaggctaaggcaagagaattt
aacgaggttttgcaagaacagtattatccctggtttgcgcaatatatggtcatgaaaagg
gcaagcattgaaccaaattttcatgatttatacttgaagtttttcgacaaagtcaactca
aaatcattgaataaggaaatggttaaagctacatatgagaactgcaaggtcttattacag
tccgatctcataaaatctagttcggaagaacgttcattgcttaaaaatcttggtagttgg
ctaggaaaattcactataggaaggaatcaaacattacgagcaaaggaaattgatcccaaa
attcttattatagaggcatatgaaaggggtttgatgattgctattataccattcacatca
aagattcttgaaccttgccagtcgagtatagcataccgtcctccaaatccttggacaatg
ggtattcttagccttctcgttgagatctataatctacctaatctcaagatgaacctgaag
tttgacattgaggtcttgtttaagaatctaagtgttgatatgaaagatgtgaaaccatct
tctcttctgaaagaccgtattcggcaaatagagggaaatccagatttttcaaataaagat
gttagtgcatctcaagcaccagtagttgctgaggtttcctctggcgtcatgcctacaata
aaccatgtggaaccacaaccagagataaatagcacttcccgtgctacaagccttccaaat
atgttgagtcagtatgcagcacctcttcgccttcctacaaacaatatggtagaagatgac
aagtccgctttaatcatgcctgaacaggtttcctctcttggtttgagccaggtttcgcca
tcacaaacaccatcactatcatcgtcttcattttctcttagccagcttattgcggcaatt
ccacgtgcagatatatatttcagaattaatgaaaagcttagctcttttggctcgttgcag
tatagcaaaatcatggatatggctttggataaggccatcaaagagattataggtcctgtc
attcaaagaagtgttacaatagcgagccgaacaactaaggaacttattctaaaggattat
gcaatggaagcggatgatagtgccgtatctcgttctgcacatttgatggtcggtacacta
gctggaagtcttgcccatgttacatccaaggaacctcttcgtgttgctttatcatctcat
cttcgtagtcttattcagggcataactaataatactgaatccacagagcagattatgctt
attcttgtcaatgataatctggatcttggatgtgccctaatagagaccgttgcaacacgc
aaggctgttgagatgatcgatggggaaatcaagcagcccttttcacaactaaggagacaa
aaagaactacttggatctgcatattatgatgcttttccttacactcaaggtcttaagcgt
gttccggatgctcttcgtcctaagcctactggccatttatctgctgcccaacgacgagtg
tatgaggacttcattactgtatggcacagtcagagtagtcaaaatgcgggtggttcagct
actgctacagcgatggcggtcgctccaagcaattccagtgtacctcgagtttacagtcca
aattcagcactgacagactccagtagcttttcctcccattttgcatctgcaagtcagact
acagaactggtacatgaagaatcagatcgcaatgcacacctttcaagcctttcttcaaaa
attggcgcgagtgacacatctacccaagttattggaaccacaaatgttgcatctgttttt
ccgcctatggttcccaatgaccttccagtgggtgaaccaacaaccacgaataaagatctt
gttacttcggcaccactttcacctacaactgctgttgatcggatgggatctgtttttgtg
gaacctttgaatactagtgatgcgctggagatgtaccaacaagtttcacaaaagctggat
actttgatcgcaaaggatggcaaagatgcagaaattcagtctgtcattgcggaggttccc
gacatcttactcagatgtgtcagtcgagatgaagctgccttggctattgcacagaaggtt
ttcagaagtttgtatgacaatgcatcaaacagtaattatgtcacatggctcctagcagct
ttggtcgcaatacgtgatgtttgcaaacttgtcgtcaaggagttaacgagctgggtaata
tattctgacgaagataagaagtttaacatcgacataattattggactaattcggtctgaa
ctgattaatcttggggattacaatgttcatttggcgaagattattgatggcggaagaaac
aaggctgcaaccgagtttgctatatcacttgtccagacattgattacccaagaatctatt
agcatcgcagaggtttataatgttgttgatgccttatcaaaacttgcaatcaggcccagt
tctcctgaatcgctgcagcagttgattgaaatcgctagaagttttgcttccgtgaaggat
gaaaatattagacagtcaagggataaaaaggttttatccggtcgtcctttggtgaataaa
gaggaaaataatgctaatgatgttgcgttcactgatgctgttggttttcaggagaaggtc
gcagtatcattctctgaatggtgtaatatatgcgatcatcccactatgggtgattcagca
tacactcattacattgtgaagctgcaacaggatggcttgctaaagggagatgatttgacc
gaccgcttttaccatattctcacggaacttgctgtggcacactctgtagtctctgagcaa
gtagttgctcctggcgggatttctcagcagccaacgcagcaactccagatttcatacttc
tcaattgattcatattcaaagcttgtggcactggtggtaaagtactcttctgtggatatt
ggaccgagtaaaggaagcctttttaataagattctttctgttatagttaggattattcaa
agagatgctgaagaaaagaaagtttctttcaatcctcggccgtattttcggttgttcata
aatttgcttagtgagcttactacttctgaccttcaccatgatagtgctaattttcaggtg
ttgacagcatttgccaatgcattccatgtgcttcaacccttgagagttcctgcatggagt
tttgcttggcttgaattggtaagccacagaagcttcatgccaaagctattgctgtgcaat
gcacagaagggctggccattcttccagaggttgcttgtcgatttgttcaaattcatggaa
ccatatttaagaaatgctgaactgggacaacccatacacctgttgtacaaaggaactttg
agagtgttacttgtgctactgcatgacttccctgagttcctttgcgattaccacttcagt
ttctgtgatgtcattccccccagctgcattcaaatgcgcaatgttattcttagtgctttt
ccacgcaatatgagacttccagatccctctactccaaatttaaagattgatcttcttgct
gagatttcaattcctccaagaatcatgtctgatgttgatggtgccttaaagtcaaagcaa
atgaagacacaggttgatgagtacctcaagaggccagatggatcctttttaactgattta
aagcagaagttacttctgccgcaaaacgaagcaaatattgctgggactcgttacaatgta
cctcttgttaattcacttgtgctctatgtgggcatgcaggctgtgcaacagttgcagctt
aataaaatgaatgcatcagcgtcggcgcagcaaatgaaccaaagtcaactggatgtccag
attgagacagctacagagctcttcagaaatcttgtaatgaattcggatacagaaggtcgc
tacctcctcctcaatgcgattgccaaccagctgcgctatccaaacaaccacacacactat
ttttccttcataattctttacttgttttctgaggcaaaccaggaaatagtccaggagcaa
ataactagggtacttctggaacggctaatagttaaccgccctcacccgtgggggctacta
attactttcattgagcttataaagaatccacgctacagtttttgggctcgatcatttact
cgctgtgcacctgagatcgagaagctgttcgagtctgttgcaaggtcttgtggaggaaaa
gggggagacgatggagttggtctccccgatggtggccattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (74)   

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