KEGG   Oceanicoccus sagamiensis: BST96_08700
Entry
BST96_08700       CDS       T04832                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
osg  Oceanicoccus sagamiensis
Pathway
osg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BST96_08700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osg03019]
    BST96_08700
   03016 Transfer RNA biogenesis [BR:osg03016]
    BST96_08700
Enzymes [BR:osg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BST96_08700
Messenger RNA biogenesis [BR:osg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BST96_08700
Transfer RNA biogenesis [BR:osg03016]
 Prokaryotic type
  tRNA degradation factors
   BST96_08700
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 Rrp44_S1 BBS2_C
Other DBs
NCBI-ProteinID: ARN74191
UniProt: A0A1X9NAK4
Position
complement(1888576..1890549)
AA seq 657 aa
MLDKDTLSQLKQLKQNIEDSKEYAVGIVKGTQRKFGFVILDDGREIFINPDEMQKVFPGD
TVKILITTQQENKDAKAKVSGTLEKLINSPLKEFTGRYIVKGKGHFVEPDVPNLNRWIFI
PPQARKDAKPNDFIRCRINRHPYPQAKPQAKITEVIGAADKTGIEGDYVVSKFQLEPAWP
DKWQESLLEVDTNGREDLTLLPFVTIDAASTMDMDDALFVQSTEQGWQLQVAIADPSARI
AVDSELDKLARQRATSTYMPGRPVPMLPEELANHLCSLTPNTARPALVCQMEIDQQGKLS
SYKIIEAMVSSKAKLSYQDVSAFLDQNGEDDSLTDCHNNKATLLTLKAVSAALLSQRQEH
NLVIPNRQEYRLVLNSQRKIDHIEPVQKSSAHQLIEECMIAANCCAADMLDGQGIFISHP
GFRSERLADVKKLAEEQLSLTNTDFSTPAGYQQLMKSIDDDKLAFPLRQVLSRLLERSRL
STDVLPHYGMGLDKYTTFTSPIRKYSDLTVHRLLKSKIKPRETVAVKPQDLAIIQQGQDH
SRQARYQMEQWLKCQFMQPFIGQTFMGTISQINSNGFTVRLDEHLIEGFVETRLLEEKYS
FDPMRLRLTSKSQTIELNQPIEVTVKEVDNNARSIRYTLPAPAANQDDKKAAAEAVN
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgttagacaaggacaccctctcccagcttaaacagctcaaacaaaatattgaagacagc
aaagaatacgctgtaggcattgttaaaggcacacaaagaaaatttgggtttgtaatttta
gatgacggccgggaaatttttattaaccctgatgaaatgcaaaaagtatttcccggggat
acagtcaaaattctgattaccacccagcaagaaaataaagatgccaaagccaaagtcagc
ggtactttagaaaaattaattaactcaccactaaaagaatttaccggccgttatattgtt
aagggcaaagggcattttgttgagccggatgtgcccaatttaaatcgctggatttttatc
ccaccgcaagcccgcaaagatgccaagcccaacgattttatccgttgcagaattaaccgc
cacccctaccctcaagccaagccccaggccaaaattactgaggtgataggcgctgcggat
aaaaccggcattgaaggcgactatgttgttagcaaatttcaactggaacccgcctggccc
gataaatggcaagagtcattattagaggttgacaccaacggtcgtgaagatttaaccctg
ctaccctttgtgactattgatgctgccagcactatggatatggatgatgccttgtttgta
caaagcactgaacagggttggcaactacaggtggctattgccgaccccagcgcaagaatt
gctgtggattccgaactcgataagctggcgcgccagcgtgcaacctcgacctatatgccg
ggccgtcctgtgcctatgttgccagaagaactggctaatcatttatgctccttaacaccg
aataccgccaggccagccttagtttgccaaatggagattgaccaacagggcaagctatcc
agctataagattattgaagcgatggttagctctaaagctaaactaagctatcaggatgtt
tctgcctttttagatcagaatggtgaagatgacagcctgactgattgccataacaacaaa
gcaacactgcttaccttaaaagcagtgtctgccgctctattaagtcaaagacaagaacat
aacctggtgatccctaatcgacaggaataccgtttagtgcttaattcacagcgtaaaatt
gatcatatagaaccggttcaaaaatccagcgcccatcaattaattgaagaatgcatgatt
gccgccaattgttgtgctgctgatatgctagatggccagggaatttttattagccaccct
ggctttcgcagtgagcgtttagcggatgtgaaaaaattggcagaagaacaattatcatta
acaaatactgatttctcaacacctgctggctatcagcaattaatgaaaagtattgatgat
gacaagctggcgtttcccttgcgacaagtattaagtcgcttgctggagcgcagccgctta
agcactgatgtcttaccccattacggaatgggtttggacaaatatacgacctttacttca
ccgattagaaaatacagtgatttaacggttcatcgtttactgaaaagtaaaatcaaaccg
cgtgaaaccgttgcggtaaaaccgcaagatctggctattattcagcaggggcaagatcat
tctcgtcaggctcgctatcaaatggagcaatggctaaaatgccagtttatgcagcccttt
attggtcaaacgtttatgggcactatttcccagattaacagcaatggctttacagttaga
ttggatgagcatttaattgaagggtttgttgaaacgcggttgctggaagagaaatacagc
tttgaccccatgcgtttgcgtttaaccagcaaatcacaaaccattgaattaaatcagcct
attgaagtaaccgttaaagaagtcgataacaacgcgcgcagcattcgttataccttgcct
gcacccgctgccaatcaagatgataaaaaagctgccgctgaagcggttaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (93)   
   KEGG ORTHOLOGY (1)   
   RefGene (90)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (107)   

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