KEGG   Ostreococcus tauri: OT_ostta10g02710
Entry
OT_ostta10g02710  CDS       T01358                                 
Name
(RefSeq) unnamed product
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
ota  Ostreococcus tauri
Pathway
ota03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OT_ostta10g02710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ota03019]
    OT_ostta10g02710
Messenger RNA biogenesis [BR:ota03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OT_ostta10g02710
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     OT_ostta10g02710
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 9832044
NCBI-ProteinID: XP_022839838
Position
10:complement(445751..447733)
AA seq 598 aa
MSGGFFDAPSDPSLEGELGGELEDDLAAMTTRTETEEVYIASTREEEAMMRAAALNYGAP
LLRPSDLLNPNALGRAPVNAKTREEIEREAYARATAPRGPDGGVGMMGGMPPPPGMMGPP
PPGMMGPPPPGMTGPPPPGMMGPPPPGMTGPPPNQRRSNQTYRGEALPEWADGPTMNAVP
MDVPGMPGVRAPPPGNWPAGQENRPRDVGRRPREQRPRGRPHYNGLYMANDEIEGILRIQ
WSATHPNDRTAYEHDYFYQSWLRRNNPSKLKEPFCPEALRELASHVKEARGPVTFVPGLD
GLGKVPFGNIRSPKPLLDMSKSSAPKGDGEQSGEGEQRRLEQEPLLAARIMIEDSMCLLL
DVDDIDRQLEEGRPSESEEDLKKRRTFLLDGLISTLLLPSVPVLVAGGAEHDGVFQRIVT
LPKGRILLADALPRFPLGSAAAATLVWAILRNVGMLIGGKNAINNPSAEALLRAAADSVQ
LMNAVAVEGTVGAVAMGLDLAEAKQQLAPLTSGSSTTGALVGALAMSLERAHLLEISPST
HKAFGAAFGMVFSVFDKHAVNAIQRRDGSLPRDLLRALMHHCTDAQKQRLKGHISALS
NT seq 1797 nt   +upstreamnt  +downstreamnt
atgagtggtggattcttcgacgcgccgagcgatccctcgctcgagggggagctggggggg
gagctcgaggacgatctcgcggcgatgacgacgcggacggagacggaggaggtgtacatc
gcgtcgacgcgggaggaggaggcgatgatgcgggcggcggctttgaattacggtgcgccg
ttgttgcgaccgagtgatttgttgaatccgaacgcgttgggacgggcgccggtgaacgcg
aagacgcgggaggagatcgagcgggaggcgtacgcgcgggcgacggcgccgcggggaccg
gatgggggggtggggatgatgggtgggatgccgccgccgcctgggatgatgggaccgccg
ccgccggggatgatgggaccgccgccgccggggatgacgggaccgccgccgccggggatg
atgggaccgccgccgccggggatgacgggaccgccgccgaatcaacgacgatcgaatcag
acctatcgcggcgaagcgcttccggagtgggccgatggaccgacgatgaacgcggtgccg
atggacgtgccgggtatgccgggcgtgcgcgcgccgccgccgggtaactggcccgcgggt
caagaaaaccgtccgcgcgatgtcggacgacgaccccgcgaacaaaggccgaggggacga
ccgcattacaacggcttgtacatggcgaacgacgagatagagggcattctgcgcatccaa
tggagcgccacgcacccgaacgatcgcacggcgtacgaacacgattatttctaccaatcg
tggctccgtcgaaacaacccgtcgaagctcaaggagccgttctgtcccgaggcccttcgc
gagctcgcatcacacgtgaaggaagcgcgtggacccgtgacgtttgttcccggcttggat
ggtctcggcaaggtgccgttcggaaatattcgctcgcccaagccgcttttggacatgtcc
aagagcagcgcgccaaagggcgacggtgaacagtccggcgagggcgagcagcgcagattg
gagcaagaaccgcttctcgcggcgcgcatcatgatcgaggattccatgtgtctacttctc
gacgtcgatgacatcgatcgccaactcgaagagggccgaccgagcgagagcgaggaggac
ttgaagaagcgtcgcacgttcttgttggacggcctcatcagcacacttcttttaccctcg
gttccggtgctcgtcgcggggggcgcagagcacgacggcgtgttccaacgcatcgtcacg
cttccaaagggcagaattctcttggccgacgcactgccgaggttcccgctcggttccgcc
gccgcggcgacgctcgtgtgggcgatcctgcgtaacgttggtatgctcatcggtggtaag
aacgcgatcaacaaccccagcgcggaggctctccttcgagccgcggcagattctgtccaa
ctgatgaacgcagtcgccgtagagggtaccgtcggcgccgtcgcgatgggtctggacctc
gccgaggcaaagcaacagctcgcaccgctcacgagtggtagttctaccaccggtgctctc
gtcggtgcgctcgcgatgtcgctcgaacgcgctcatttgcttgagatttcgccgtcgacg
cacaaggcattcggtgcagcgttcggcatggtgttctccgtgttcgacaagcacgccgtg
aacgccattcagcgacgcgacggttcgctcccgcgcgacttgcttcgtgctctcatgcat
cactgcactgacgctcaaaaacagcgcctgaagggccacatcagcgctctcagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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