KEGG   Salipiger abyssi: Ga0080574_TMP4107
Entry
Ga0080574_TMP4107 CDS       T04681                                 
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
paby  Salipiger abyssi
Brite
KEGG Orthology (KO) [BR:paby00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:paby03021]
    Ga0080574_TMP4107
Transcription machinery [BR:paby03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Ga0080574_TMP4107
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_28 HTH_10 HTH_38 HTH_AsnC-type HTH_29 HTH_Tnp_ISL3 UPF0122 HTH_24 MarR_2 GerE Xre-like-HTH DUF134
Other DBs
NCBI-ProteinID: APZ54441
UniProt: A0A1P8UYI0
Position
complement(3520867..3521439)
AA seq 190 aa
MDQRAEDARAAMAAMAQGDRQALGRLVALYGPGLTRYAAQMLDAPSEAEDVVQEVFLKAW
RNAGRYDPAKAAVSTWLYRIAVNHCIDRSRRTRFRRFIGLEATDEMSDDGPGAAAIHESR
DRLAHTRAAIAELPDRQRRAILLRAAGDMSTAEIAATMGVSPGAVEQLLVRARNTLRRQL
DPDEMEERRP
NT seq 573 nt   +upstreamnt  +downstreamnt
atggatcaacgtgcagaagacgcgcgggcggcgatggccgccatggcgcagggggaccgg
caggcgctggggcggctcgttgcgctctacgggccggggctgacgcgctatgccgcgcag
atgctcgatgcgccctcggaggctgaagacgtggtgcaggaggtctttctcaaggcctgg
cgcaacgccggacgctacgatcccgccaaggccgccgtgtcgacctggctctaccggatc
gcggtcaaccattgtatcgaccgcagccgccgcacccgcttccgccgcttcatcggcctg
gaagcaaccgacgagatgagcgatgacggccccggagcggccgccatccatgagagccgc
gaccggctggcgcatacacgcgctgccattgcggagctccccgaccgccagcgccgcgcg
atccttctgcgcgccgccggcgacatgagcaccgccgagatcgccgccacgatgggggtg
agccccggcgcggtggaacaactgctggtgcgggcgcgcaacacgctgcgccgccagctc
gacccggacgaaatggaggagaggaggccatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (30)   

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