KEGG   Candidatus Paracaedibacter acanthamoebae: ID47_00170
Entry
ID47_00170        CDS       T03232                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
paca  Candidatus Paracaedibacter acanthamoebae
Pathway
paca03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:paca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ID47_00170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paca03400]
    ID47_00170
DNA repair and recombination proteins [BR:paca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ID47_00170
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      ID47_00170
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII DEAD UVR AAA_30 Kinesin UB2H AAA_22 Microtub_bd AAA_33
Other DBs
NCBI-ProteinID: AIK95512
UniProt: A0A077AQR1
Position
complement(39534..41609)
AA seq 691 aa
MLLQPLLYDKEFVKSSPLKVVSEFQPAGDQPQAIKDLTEGVLKGEKDQVLLGVTGSGKTF
TMAHVIANTQKPTLVLAPNKTLAAQLYAEMKEFFPHNAVEYFVSYYDYYQPEAYVPRTDT
YVEKEASINEQIDRMRHSATRALLERRDVIIVASVSCIYGIGGLETYSGMIIPLKVGQYI
ERNDLIRKLIQIQYKRNDLSFVRGTFRVRGDVLEVFPSHYEDRAWRISFFGDEIEAITEM
DALTGEKFAQLEQIRVFANSHYVTPGPTIEQAIRKIDIELKQRLKEFQDQNKLLEAQRLE
QRIKFDIEMMAATGTCPGIENYSRYLTGRAPGEAPPTLFEYLPKDALLILDESHVTVPQL
NGMYKGDRARKQTLSEYGFRLPSCADNRPLKFEEWEALRPQTVFVSATPSTWELEKTHGV
FAEQIIRPTGLIDPVCIVRPTEHQIDDLIAECKAVVNQGMRVLVTTLTKKMAEALSDYLN
DADLKVRYMHSDIEVLERVEIIRDLRLGAFDVLIGINLLREGLDIPECGLVVILDADKEG
YLRSRTSLIQTIGRAARNVNGRVILYADRITKSMQEAFSETNRRREKQQAYNTAHGITPE
SVKKSIKDVLQSVYAADSMTVEIDTESKEMAGRNLQSYIKEIDKRMRDAASNLEFEEAAR
LRDELKRLEAQQLGITSPHAPKPQPRGKRRR
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgcttctccagccattactttacgacaaagaatttgttaaatcctccccccttaaggtt
gtttcagagtttcagcccgccggtgatcagcctcaggccataaaagacctaacagaaggg
gtgctcaaaggggaaaaagatcaagttttgctgggcgtcacgggatctggtaaaacattt
acaatggctcatgtcatcgctaacacacaaaaaccgaccttggtgctggcgcccaataaa
acgttagcagcccagctttatgcggaaatgaaagaattcttcccccataatgcggtggaa
tactttgtatcctattatgattactatcagccagaagcctatgtgccgcgcaccgatacc
tatgttgaaaaagaagcatcgatcaatgaacaaattgatcgcatgcggcactcagcaacc
cgagctttattggaacgccgggatgtgatcattgttgccagtgtctcttgcatttatggt
attggcggtctcgaaacctatagtggtatgattatccccttaaaagtggggcaatatatt
gaacgcaatgatctcatccgcaaactgatccagattcaatataagcggaacgatttatcc
tttgtccgcgggactttccgagtccgcggggatgtgttggaagtatttccttctcactat
gaagaccgggcctggcgcattagcttttttggggatgaaatcgaagctatcaccgaaatg
gatgctttgaccggtgaaaaatttgctcaactggaacaaattcgggtctttgccaacagc
cactacgttacacccggtccgaccatagagcaggctattagaaaaatagacattgagttg
aaacaacgactcaaagaatttcaagatcaaaataaattgctcgaagctcaacgccttgaa
caacgtatcaaatttgatattgagatgatggcggccaccggtacatgtcctggtattgaa
aactattctcgctatctaacgggtcgggctcccggcgaagctccccccaccttgtttgaa
tatctacccaaggatgcgcttctcatcctcgatgaaagccacgtcaccgtgccgcaattg
aatggaatgtacaagggtgaccgagcccgcaagcaaaccctcagtgagtatggatttcgc
ctcccctcttgcgccgataaccgtccactaaaatttgaagaatgggaagccttacgtccc
caaaccgtcttcgtgtcagccactccaagcacctgggaattggaaaaaacacacggcgtc
tttgccgagcaaatcatccgtcccacgggcttgattgaccctgtttgcattgttcgtccc
acagagcatcaaattgatgacttaattgctgagtgtaaagctgtcgttaaccaaggcatg
cgtgtgttggtgacaactctcacaaaaaaaatggcagaagctctcagtgattacttgaat
gacgcggatcttaaagtccgttatatgcattctgatattgaagttttggagcgggtggaa
atcattcgcgatttaagattaggggcctttgatgtcctgattggaattaacttgctgcgt
gaaggtctcgatatccctgaatgtggcttggtcgttatcctggatgcggataaggaagga
tatttacgctctagaacctccttaattcaaaccattggtcgtgcagcgcgtaatgtgaac
ggtcgcgtcattctctatgcagatcggatcacaaaatccatgcaagaagccttttccgaa
accaatcgccgtcgcgaaaagcaacaagcctacaatacggctcatgggatcacccctgaa
tcggttaagaaaagcattaaagacgttctgcaaagcgtctatgctgccgattcgatgact
gttgaaattgatacagagtcaaaagaaatggctgggcggaatctgcagtcttatataaaa
gagattgacaaacggatgcgagacgctgcctctaaccttgaatttgaagaagcggcccgt
ctacgcgatgaattgaaacggcttgaggcccaacaacttggcattacgtccccccatgcc
cctaaaccccaaccacgcggaaagagacgtcgctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (71)   

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