KEGG   Cutibacterium acnes subsp. defendens ATCC 11828: TIIST44_02210
Entry
TIIST44_02210     CDS       T01972                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pad  Cutibacterium acnes subsp. defendens ATCC 11828
Pathway
pad03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TIIST44_02210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pad03021]
    TIIST44_02210
   03400 DNA repair and recombination proteins [BR:pad03400]
    TIIST44_02210
Enzymes [BR:pad01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TIIST44_02210
Transcription machinery [BR:pad03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TIIST44_02210
DNA repair and recombination proteins [BR:pad03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TIIST44_02210
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AER04961
Position
complement(474031..477912)
AA seq 1293 aa
MLDTNYYDRLQIGLATADQIRAWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELVAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMITAVDDEARHRDLPSLEAKVQTERSRLEQRRDSELEARRVKLEED
MAQLEADGAKADVRRKVKDGAEKELKHIETRAQRQIDRLDAVWDRFKNLKVQDLEGDEIL
YREMKSRFGKYFEGSMGAEAVKRRLHDFDLKSESEKLREIIKTGRGQKKTRALKRLKVVQ
AFLDSGNSPEAMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLVDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVSGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKMHQCGLPKTMALELFKPFVMKRLADLEHAQNVKSAKRMVERQR
PVVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQ
MAVHLPLSPEAQAEARVLMLSTNNILKPADGRPVALPSHEMIIGAYYLTMALDGLKGEGR
AFTSLAEAIMAHDLGELEIGAKIKLRLKGIVPPHDETVRADGSVILDTTLGQALFNEVLP
DDYPYVDFLVGKKQIGKIVNDLSERMTQLEVAHVLDNLKDIGYKWGSLSGVTVSIGDVQT
PPTKPEILAGYETRAAKVDREYDRGAVTEEERRQDLIQIWTEATAELTAAMEANFTQTNP
IHMMVDSGARGSMTQMRQIAAMRGLVADPKGDIIPRPIKSNFREGLTVLEYFISTHGGRK
GQADTALRTADSGYLTRRLVDVSQDVIVRENDCGTTRGMPKTIAVNDGNGNLVRVEGLDT
AVYARCLAADALDANGNVVVEANSDLGDEEISRLIAAGISQIKVRSVLTCTAAQGCCARC
YGRSLSTGHLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEA
RSPKGKSPLAEAAGVIRIDESDNRRKLVLVRDDGEDDVEYVVPRRARLEFDLDGTHRVIR
DGVRVAAGEQLMGGTADPQDVLRISGVRRVQEYLVKEVQKVYNTQGAGIHEKHIEIVIRQ
MLRRITVIESGDTQMMPGELVDRGAYEAANRKAVAEGGRPAEGRPVLMGITKASLATESW
LSAASFQETTKVLTDAAINGKTDTLVGLKENVILGKLIPAGTGLEVYRNMRVEPTAEAKA
AAFTMNYDPFDYDFGSGSGEAVPLDDLDLGDLG
NT seq 3882 nt   +upstreamnt  +downstreamnt
gtgctggacaccaactactacgaccggttgcagatcggcctggccacggccgaccagatc
cgtgcgtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaaa
cccgagcgtgacggcctgttctgcgagaagatcttcggaccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctccaacgtgcgtcgtgagcgtatgggacatattgagctggttgccccg
gtgacccatatctggtatttcaaaggggttccctcccgtctggggtacttgctcgatatc
gctccgaaggacctcgagaaggtcatttacttcgcggcctatatgatcaccgccgtcgac
gatgaggctcgccaccgtgaccttccatcgctggaggccaaagtgcagaccgagcggtcg
cggctggagcagcgccgtgattccgagctggaggcccgccgggtcaagcttgaggaagac
atggctcagctcgaggccgacggtgccaaggctgacgtgcgacgcaaggtcaaggacggc
gccgagaaggagctcaagcatattgaaactcgcgctcagcgccagattgatcgtctggac
gccgtgtgggatcgcttcaagaatctcaaggttcaagaccttgagggtgacgagattctc
taccgcgagatgaagtcgcgctttggcaagtactttgagggctcgatgggtgccgaggcg
gtcaagcgtcgtctgcacgatttcgacctcaagagcgagtctgagaagctgcgtgagatc
atcaagactggtcgcggccagaagaaaacccgcgcccttaagcgcctcaaggtggttcag
gctttcctcgattccggtaactcgccggaggctatggtgctggactgcgtgccggtcatc
ccgccggatctgcgtccgatggtgcaactcgatggtggccgcttcgccacctcggacctc
aacgacctttaccgtcgcgtcattaaccgaaacaaccgccttaagcgactggttgatctt
ggcgccccggagatcatcgtgaacaacgagaagcgaatgctccaggaggctgtcgactcg
ctgttcgataacggccgtcgtgggcgtccggtgagtggcccgggcaaccgcccgctgaag
tcgctgtcggacatgcttaagggcaagcagggccgtttccgtcagaatctgcttggtaag
cgcgtcgactattctggccgctcggtcattgtcgtcggcccgcagctcaagatgcaccag
tgtggtttgccgaagacgatggcgttggagctgttcaagcctttcgtcatgaagcgtctg
gctgaccttgagcatgctcagaatgtgaagtctgccaagcgcatggtggagcgtcagcgt
ccggtggtgtgggacgtcctcgaggaggtcattaaggagcatccggttctgctgaaccgt
gcaccgacgctgcaccgcctgggtattcaggccttcgagcctcagctcattgaaggcaag
gctatccagctgcacccgctcgtctgctcggccttcaacgccgacttcgatggtgaccag
atggctgtgcacctgccgttgagtcccgaggcccaggctgaggcccgcgtcctcatgctg
tcgacgaacaacatcctcaagcctgctgatggtcgcccggtcgccttgccttcgcacgag
atgatcattggtgcctactacctgacgatggcccttgacggcctcaagggtgaggggcgt
gccttcacctcgcttgcggaggccattatggcccacgatcttggtgagctcgagattggc
gccaagatcaagctgcgccttaagggcattgtgccgccgcatgacgagacggttcgtgcc
gacggttcggtgatcctcgataccactctcggacaggcgctgtttaacgaggtgcttccg
gacgactacccgtacgttgacttcttggttggcaaaaagcagatcggcaagatcgttaat
gatctcagcgagcgcatgacccagctcgaagtggcgcacgtcctcgacaaccttaaggac
attggctacaagtggggttccttgtccggcgtgaccgtttctattggtgatgtccagacc
ccgccgactaagccggagatcctggctgggtatgagacccgcgctgccaaggtcgaccgt
gagtacgatcgtggcgccgtcaccgaggaggagcgtcgtcaggacctgatccagatctgg
actgaggccaccgccgagctgaccgccgccatggaggccaacttcacccagactaatccg
attcacatgatggtggattcgggcgctcgaggcagtatgacgcagatgcgccagattgcc
gctatgcgcggtctggtggccgacccgaagggcgacatcattcctcgcccgattaagtcg
aacttccgtgagggcctcacggttctggagtacttcatttccacccacggtggtcgtaag
gggcaggctgataccgctttgcgtaccgccgactcgggttacctgacccgtcgtctggtc
gatgtttcccaagacgtgatcgtgagggagaacgattgcggcactacccgcggtatgccc
aagacgattgctgtcaacgatggcaacggcaacctggtgcgtgtggaggggctggacact
gcagtgtacgcccgctgcttggctgctgacgccctcgacgcgaacggcaatgttgtggtg
gaggccaactctgaccttggtgatgaggagatttctcggctcatcgcggctggaatctcg
caaatcaaggtgcgctctgtgctgacctgcactgctgcccagggctgctgcgctcgctgc
tacggacgctcgttgtcgaccggtcatctggttgacgtcggtgaggccgttggcattatc
gccgctcagtcgattggtgagcccggaacccagctgacgatgcgtaccttccacaccggt
ggtgttgctggtgacgacattacccagggtcttccccgtgtcgtcgagctcttcgaggcc
cgtagcccgaagggtaagtcgccgctggctgaggctgccggtgtcatccgtatcgacgag
tccgacaatcgccgcaagctcgtattggtgcgtgatgacggtgaggacgatgttgagtac
gtcgtgccgcgccgtgcccgtctcgagtttgatctcgacggtacccaccgcgttatccgc
gacggtgtgcgagtcgccgctggcgagcagctcatgggtggtactgccgatccgcaggat
gtgttgcgtatttccggtgtccgccgggtgcaggagtacctcgtcaaggaggtgcagaag
gtctacaacactcagggtgctggtatccacgaaaagcacattgagattgtcattcgccag
atgttgcgccggatcaccgtcattgagtctggtgacacccagatgatgccaggcgagctc
gtggaccgcggtgcatatgaggctgctaaccgtaaggcggttgctgagggaggccgtccg
gccgagggccgcccggtgctgatgggcatcaccaaggcgtcgttggccaccgagtcgtgg
ttgtcggcggcgtccttccaggagaccactaaggttcttactgacgccgcgatcaatggc
aagacggacaccttggttggtctcaaggagaacgtcatcctcggtaaacttatcccggcc
ggtactggtctggaggtctaccgcaatatgcgggtggagccgaccgcagaggctaaggct
gctgcgttcacgatgaactatgacccgttcgattacgactttggttcaggatcgggcgag
gctgttccactggatgacttggacttgggcgatctgggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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