KEGG   Paenibacillus sp. FSL R5-0345: R50345_00985
Entry
R50345_00985      CDS       T03333                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
paef  Paenibacillus sp. FSL R5-0345
Pathway
paef03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paef00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    R50345_00985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paef03019]
    R50345_00985
   03016 Transfer RNA biogenesis [BR:paef03016]
    R50345_00985
Enzymes [BR:paef01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     R50345_00985
Messenger RNA biogenesis [BR:paef03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     R50345_00985
Transfer RNA biogenesis [BR:paef03016]
 Prokaryotic type
  tRNA degradation factors
   R50345_00985
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3
Other DBs
NCBI-ProteinID: AIQ33355
Position
195304..198186
AA seq 960 aa
MITQEILLDFMRETAYKPMTYEELVSHFALEDSTGFKKFEELLIELEQDGRIVLTRNARY
GVPERMDLLRGRLQAHAKGFAFLIPDDRDHPDVYIHANDLKGAMNGDIVLIRITSKSPSG
GRMEGEVERIVKRGVLQTVGVFQNLETYGFVLPDDKRINRDIFIPKQSFMGAVDGQKVVV
RIVNYPEGRSAAEGEIIEILGHKDDPGVDILSIIRKHQLPEAFPAEVMYEADNAPDSITE
EEIAEQGRRDLRGLNIVTIDGEDAKDLDDAVNVQRLENGNYKLGVHIADVGYYVRESSEL
DKEAYDRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFNEQMKVVKHDVFT
SVIRTKERMTYSNVRKILEDEDPELLERYSPLIDDFRLMKELAMKLRDARMRRGAVDFDF
EESKIIVDENGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVMREVIENGGALSQKRHDYLAGRMPDIAQQ
SSERERVAVEAERDTEQLKKAEYMQDKVGEEFEAMVSSVTSFGMFIELDNTVEGLIRLSA
MSDDYYHFDEAHMALIGERTSRVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPRAPGEHR
SGGFGGSRGGKGGRSGGGGFGKPAAGGKAGGGKGRGGKGKPGAAVGAGKGKPGAGVRAGE
GPREAAGAVAPGGRGKRKRGRDAGEDASRGVAAPGGSTGAERGGEAGGNAGAPRERSGGR
GRGGDNGGAGGGRGISFGFGSGKGGYGAPASESSGGEVRGLDGSTKFRSREDRGGNFGGG
EGRNGAPTGKGRRKKKNKSGVFIGQSVTPGNVQTSEQATSKRSDTTGSTPDGAPRKRKKK
NT seq 2883 nt   +upstreamnt  +downstreamnt
atgataacacaagaaatattactcgatttcatgcgggaaactgcatataaaccaatgact
tatgaagagctggtgagccattttgctctagaagatagcacagggtttaaaaagttcgag
gaactactaattgaattagagcaggacggaagaattgtattaactcgtaatgcacgttat
ggcgtgccggaacgaatggatttactgcgaggccggttacaagctcatgcgaaaggcttc
gcttttttgatcccggatgatcgtgatcatcctgacgtgtacatccatgcgaatgatcta
aagggagctatgaatggcgatatcgttttgatccgtattacctctaaaagtccgtccggc
ggacgtatggaaggtgaagttgaacgtattgtaaaacgtggcgtattgcaaacggtcggc
gtatttcaaaatctagagacctatggttttgtgctgcctgatgataaacggattaaccgt
gatatttttattcctaagcaatccttcatgggggcggtagacgggcaaaaggtcgttgtg
cgcatcgtgaattatccagaaggacgatcagcagcagaaggtgaaattattgagattctc
ggacataaggatgatccgggagtcgatattctatctatcatccgtaagcatcagctacca
gaggcatttccggctgaagtgatgtacgaagcggacaatgctccggattcaatcacagaa
gaggaaattgctgagcagggacggcgcgacttgcgcggactaaacattgtcacgattgat
ggcgaagatgctaaggacttggatgatgccgttaatgttcagcgattggagaacgggaat
tacaagctaggcgtgcatattgcggatgtaggttattacgtgcgtgagagctctgaactt
gataaagaagcttacgatcggggctgtagcgtgtatttggtggatcgggttattccgatg
cttcctcaccgtttgtctaacgggatttgtagcttgaacccacaggttgaccgcttaaca
atgtcctgcgagatggaatttaacgaacaaatgaaggttgtgaagcacgatgtctttacc
agtgtgattcgcaccaaagaaagaatgacttattctaatgttcgtaaaattttggaggat
gaagatccagaattgctggagcgttatagtccattaattgatgatttccgtctcatgaaa
gaactagcgatgaagctgcgcgatgcgcggatgcggcggggcgcggttgattttgatttc
gaagagagcaaaatcattgtggatgagaacggcaaggctgtagatattgtgaagcgtgag
cgttctgtagcggagcagattatcgaggaatttatgcttgctgcgaatgaaacggtcgct
gagcatttccactggctgaaggttccgttcctttaccggattcacgaagatccagatcca
gagaagctgcagaattttatggcttttgcggctaatttcggatatcacgtgaagggacgt
ggcaattcggttcatccacgtgctttgcaggatctgttggagcaaatccaaggaactaaa
gaacagactgttattagcacaatgatgctgcgttccatgaagcaggcgaaatatgatgca
gagagcacaggccatttcggactcgctgcagaatactattctcactttacttctccaatt
cgccggtaccccgatctggttattcaccgcgtaatgcgtgaagtgattgagaatggaggg
gcgctgagccagaaacgacatgattatttggccggccggatgcctgacattgctcagcag
tcctcggaacgtgagcgtgtggcggtagaggctgaacgtgatacagagcagctgaagaaa
gctgaatacatgcaagataaagtaggcgaggaattcgaggctatggtcagcagtgtgacc
agcttcggaatgttcatcgagctggacaacaccgtcgaaggactcattcgtctcagtgca
atgagcgatgattattatcacttcgacgaggcgcatatggcgctcattggcgagcgcaca
tcacgggtgttccgtattggcgacgaggtgaagattcgagtcgccaaggtaaatatggat
gaccacacgatcgatttcgagttggtcgacatgaaaccgcgcgcgccaggcgagcatcgc
agcggtggttttggaggcagccgcggtggcaaaggcggccgttcaggtggcggcggcttc
ggcaagccagccgctgggggtaaagccggcggcggcaagggccgcggcggtaaaggcaag
cccggcgctgctgtaggcgcgggcaagggcaagccgggcgcaggtgtgcgcgccggcgaa
gggccgcgcgaagcggccggtgctgttgcaccgggcggacgcggaaagcggaagcgcggg
cgtgatgccggcgaggatgcgagccggggtgttgcggcgccgggcggaagcaccggcgca
gagcgcgggggcgaagccggcggcaacgcaggcgcaccgcgtgagcgcagcggcggtcga
ggccgcggtggggacaacggcggtgccggtggtggacgcggcatcagcttcggctttggc
tccggcaaaggcggatacggcgctcctgcgtccgagtcttccggcggcgaagttcgcggc
ctggacggcagcacgaagttccgcagccgcgaggaccgcggcggtaactttggcggtgga
gaaggtcgtaacggcgctccaacaggtaaaggtcgccggaaaaagaagaacaaaagcggt
gtgttcatcggtcagtccgtgacaccgggcaacgttcagacgtctgaacaagccacttct
aaacgtagtgacactacgggcagcactccagacggagctcctcgtaagagaaagaagaaa
taa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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