KEGG   Pseudomonas aeruginosa M18: PAM18_0079
Entry
PAM18_0079        CDS       T01973                                 
Symbol
icmF1
Name
(GenBank) IcmF1
  KO
K11891  type VI secretion system protein ImpL
Organism
paf  Pseudomonas aeruginosa M18
Pathway
paf02025  Biofilm formation - Pseudomonas aeruginosa
paf03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:paf00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    PAM18_0079 (icmF1)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02025 Biofilm formation - Pseudomonas aeruginosa
    PAM18_0079 (icmF1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:paf02044]
    PAM18_0079 (icmF1)
Secretion system [BR:paf02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   PAM18_0079 (icmF1)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical RHH_1 DUF6611
Other DBs
NCBI-ProteinID: AEO72568
Position
complement(89946..93476)
AA seq 1176 aa
MKGFLNFFARWVVPVLGLLALSLIIWFLGPLLRLGNYEPLASATSRWVLIVLLFLVWIGF
RVLRIVQARRNAAKVMQSLAEVSAPDAASVATAEELATLKQRMDEALALLKRAKLGGSER
RNLYELPWYVIIGPPGSGKTTALMNSGLDFPLAAQMGAGAIRGVGGTRNCDWWFTDEAVL
LDTAGRYTTQDSHAQVDKAAWLGFLDLLKTQRKRRPIDGAFIAISLSDLLLGSDAERAAH
AQAIRARIQELYQQLGVRFPIYVMLTKFDLVPGFMEFFDSLNREERAQVWGMTFALDDGK
SAEGPLAVFDSEFALLEQRLTARLVERLQQERDPARRDLVYGFPQQFAALRECLGEFLNG
VFKPNPYEERPLLRGLYFTSGTQEGSPIDRLIGSMAQSMNLDRQHLARQTGTGRSYFIER
LFREVAFGERGLVGTNPKVERRRKWLTIGALSATALVVLAVTAVWIASYRANQSYIAAVD
QRVDPLARGIESLSPAQRDVLAVLPQLNAVQNLAGDAPSWAEGYGLYQGDMLGEESASVY
RKLLIAVFAPRLVTRIEEQLRSGGSSDFLYEGLKAYLMLGSPDHYDADFIKAWISLDWER
NLPRDLSPEQRQALHAHLDALLERRPPSARLDQDLVEDLRRQLQQLPVAQRVYDRVKRQR
LPKDVPDFRISDAAGRDAPLVFARKSGKPLTDPLSGFFTYRGYREVFLTASLSQAGTIAE
EQWVLGRDLNDAGDAANLALDVRRLYFQDYLRQWDDLLADLTVVPITNVTQAADVLRILS
GPTSPFRKLLEAVARETDLQKGDRLVAAQVKKAADGTVDKLKQRLGSLVGQEEEGAREQP
RQVDSDPISAHFAELNSLVSKGEGGNEPAPIDSLLEDMNALYVQVSAMAGASGDSLLGDA
KNQVAAAASRVALSAERQPPVVQGLVKNVVNSTTSSMMGSVRNQLNAAWISDVVSVYRQS
LAGRYPIAAGSSRDATLEDFGHFFGAGGVMDSYFRQYLQPYVDTSASTWRWQPGAAQKLG
INPGVLHTFQRAAAIRDAFFRSGGMQPAVRFELKPVTMDAAISQFILDLDGQQLTYDHGP
ARPVAMQWPSANGLGVVRLTVTPPPSSGRSGLTLEGPWAWFRLLDQSDLERGNSPDRFTL
RLRIDGSSIACELRASSAFNPFKSRVVSGFSLPERL
NT seq 3531 nt   +upstreamnt  +downstreamnt
atgaaaggcttcctcaacttcttcgcgcgctgggtggtgccggtgctcggcctgctcgcc
ctgagcctgatcatctggttcctcggcccgctgctgcgcctgggcaactacgaaccgctg
gcctcggcgaccagccgctgggtgctgatcgtcctgctgttcctggtctggatcggcttc
cgcgtgctgcgcatcgtgcaggcccggcgcaacgcggcgaaggtcatgcagagtctcgcc
gaggtcagcgcgccggacgccgccagcgtcgccaccgccgaagagctggcgaccctcaag
caacgcatggacgaggccctggccctgctcaagcgggccaagttgggcggcagcgagcgg
cgcaacctgtacgagttgccctggtacgtgatcatcggcccgcccggttcgggcaagacc
accgcgctgatgaattccggcctcgacttcccgctcgccgcgcagatgggcgccggggcg
atccgcggggtcggcggcacgcgcaactgcgactggtggttcaccgacgaagcggtgctg
ctggacaccgccggccgctataccacccaggacagccacgcccaggtggacaaggccgcc
tggctgggcttcctcgacctgctcaagacccagcgcaagcgccgccccatcgatggcgcg
ttcatcgccatcagcctttccgacctgctgctgggcagcgacgccgagcgcgccgcccat
gcccaggcgatccgcgcacgcatccaggagctgtaccagcagctcggggtgcgcttcccg
atctacgtgatgctgaccaagttcgacctggtgccgggctttatggagttcttcgacagc
ctgaaccgcgaggaacgcgcgcaggtctgggggatgaccttcgccctcgacgacggcaag
agcgcggaaggcccgctggcggtgttcgacagcgaattcgccctgctcgaacagcgtctc
accgcgcgcctggtggaacgcctgcagcaggagcgcgacccggcgcggcgcgacctggtc
tacggcttcccgcagcaattcgccgccctgcgcgaatgcctcggcgagttcctcaacggc
gtgttcaagcccaacccctacgaggaacgcccgctgttgcgcggcctgtacttcaccagc
ggaacccaggaaggcagtccgatcgaccgcctgatcggcagcatggcgcagtcgatgaac
ctcgaccgccagcacctggcacggcagaccggaaccgggcgcagctacttcatcgagcgg
ctgttccgcgaagtggcgttcggcgaacgcggcctggtcggcaccaacccgaaggtcgag
cgccgccgcaagtggctgaccatcggcgcgctgagcgccaccgcgctggtggtgctggcg
gtgacggcggtatggatcgccagctaccgcgccaatcagagctacatcgccgcggtcgac
cagcgcgtcgacccgctggcgcgcggcatcgagtcgctgagcccggcccagcgcgacgtc
ctggccgtactgccacagctcaacgcggtgcagaatctcgccggcgacgcgccgagctgg
gccgaaggctacgggctgtaccagggcgacatgctcggcgaggagtccgccagcgtctac
cgcaagctgctgatcgcggtgttcgccccgcgcctggtgacccgcatcgaggaacagttg
cgctccggcggcagcagcgatttcctctacgagggcctgaaggcctacctgatgctcggc
agcccggaccattacgacgccgacttcatcaaggcctggatcagcctcgactgggaacgc
aacctgccgcgcgacctctcgccggaacagcgccaggcgctgcacgcgcacctcgacgcg
ttgctcgaacgacggccgccgtcggcgcgcctggaccaggacctggtcgaggacctgcgc
cgccagttgcagcaactgccggtggcgcagcgggtctacgaccgggtcaagcggcagagg
ctgcccaaggacgtgcccgacttccgcatcagcgacgccgccggccgcgacgcgccgctg
gtgttcgcgcgcaagagcggcaagccgctcaccgacccgctcagcggcttcttcacctac
cgcggctatcgcgaggtgttcctcaccgccagcctcagccaggccggcaccatcgccgag
gaacagtgggtgctcgggcgcgacctgaacgatgccggcgacgccgccaacctggccctc
gacgtgcgtcgcctgtatttccaggactacctgcggcagtgggacgacctgctcgccgac
ctcaccgtggtgccgatcaccaatgtcacccaggccgccgacgtgctgcgcattctctcc
ggaccgacctcgccgttccgcaagctgctcgaggcagtggcccgcgagaccgacctgcag
aagggcgaccggctggtcgccgcgcaagtgaagaaggccgccgacggcaccgtggacaag
ctcaagcagcgcctcggctcgctggtcggccaggaggaagagggcgcccgcgaacagccg
cggcaggtcgacagcgacccgatcagcgcccacttcgccgaactcaacagcctggtcagc
aagggcgagggcggcaacgagccggcgccgatcgacagcctgctggaggacatgaacgcg
ctctacgtacaggtcagcgccatggccggagccagcggcgactcgctgctcggcgacgcc
aagaaccaggtggccgccgccgcctcgcgcgtggccctcagcgccgagcgccagccgccg
gtggtccagggcctggtgaagaacgtggtcaactccaccaccagcagcatgatgggcagc
gtgcgcaaccagctcaacgcggcctggataagcgatgtggtcagcgtctaccggcagtcc
ctggccgggcgctacccgatcgccgccggcagctcgcgcgacgccaccctggaagacttc
ggccacttcttcggtgccggtggggtgatggacagctacttccgccagtacctgcaaccc
tacgtcgacacctccgccagcacctggcgctggcagcccggcgcggcgcagaagctcggc
atcaaccccggcgtgctgcacaccttccagcgcgcggcggcgatccgcgacgccttcttc
cgctccggcggcatgcagccggcggtgcgcttcgaactcaagccggtgaccatggacgcg
gcgatcagccagttcatcctcgacctcgacggccagcagctgacctacgaccacggcccc
gcccgcccggtggcgatgcagtggccgagcgccaacggcctcggcgtggtccgcctgacg
gtgacgccgccgcccagcagcggccgttccggcctgaccctggagggcccctgggcctgg
ttccgcctgctcgaccagtcggacctggaacgcggcaactcgccggaccgcttcaccctg
cggctgcgcatcgacggctccagcatcgcctgcgagctgcgcgccagcagcgccttcaac
cccttcaagagccgggtcgtgtccggcttcagcctcccggagcgcctttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system