KEGG   Pantoea agglomerans C410P1: BEE12_07860
Entry
BEE12_07860       CDS       T04739                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pagc  Pantoea agglomerans C410P1
Pathway
pagc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pagc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BEE12_07860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pagc03021]
    BEE12_07860
   03400 DNA repair and recombination proteins [BR:pagc03400]
    BEE12_07860
Enzymes [BR:pagc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BEE12_07860
Transcription machinery [BR:pagc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BEE12_07860
DNA repair and recombination proteins [BR:pagc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BEE12_07860
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AOE39774
UniProt: A0A379AM91
Position
1737294..1741517
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHEKNEQDEWVAKTSIIDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGVEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLDEHWCDVLELNSVDSLKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGSTMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMVDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIVSAGSADFLEGEQAEFSRIKISNRDLEANGKVGATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGEVPV
APQVTADEASASLAELLNAGLGGNKDD
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgcgctggcttcgccagacatgatccgttcctggtcttttggtgaagtgaaaaag
ccagaaaccattaactaccgtacttttaagccagagcgcgatggtctgttctgtgcccgt
atcttcgggccggtaaaagactatgagtgcctgtgcggcaaatacaagcgcctgaaacac
cgtggtgtgatttgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcgtccccgactgcgcacatctggttcctgaagtcactg
ccatcgcgtatcggcttactgctggatatgccactgcgtgacatcgagcgcgtgctctac
tttgaatcttacgtggtaatcgaaggtggcatgaccaacctcgagaagcgtcagattctg
actgaagagcagtaccttgacgctctggaagagttcggtgacgagttcgacgccaaaatg
ggcgccgaagcgatccaggccctgttgaaaaacatggatctggagcaggagtgcgagcag
ctgcgtgaagagctgaacgaaactaactccgaaaccaaacgtaaaaaactgaccaagcgc
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgttctgccaccggatctgcgtccgctggtaccgctggatggtggccgtttc
gcaacgtcggatctgaacgatctctatcgtcgcgtgatcaaccgtaacaaccgcctgaaa
cgcctgctggatctggctgcgccagatatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagcggtcgatgcactgctggacaacggtcgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcactggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactattctggtcgttcggttatcaccgtaggtccatac
ctgcgcctgcatcagtgcggtctgccgaagaaaatggcactcgaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagcggttgtctgggatatcctcgacgaagtgatccgtgagcacccg
gttctgctgaaccgtgcgcctacgctgcaccgtctgggtattcaggcctttgaaccggtt
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctcgcatcgctgcatgctcgcgttaaggtgcgtatcaccgaacacgagaaaaatgagcag
gatgagtgggttgctaaaaccagcatcatcgacaccactgttggccgtgccatcctgtgg
atgatcgtgccaaaaggtctgcctttctccatcgttaaccaggcgctgggcaaaaaagct
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggtttcgcttacgcagcccgttcaggcgcgtctgtcggc
atcgacgacatggttattccagagaagaaagtggaaatcatcaccgaagcggaagcagaa
gtggctgagatccaggagcagttccagtctggtctggtaaccgccggcgaacgttacaac
aaagtcatcgatatctgggcagcggccaacgaacgtgttgccaaggcgatgatggaaaac
ctctcaaccgaaaccgttattaaccgtgacggcgtagaagagcgacaggtttcctttaac
agcatctttatgatggctgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacaccaatcacg
gcgaacttccgtgaagggttgaacgtactccagtacttcatctcaacccacggtgcacgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttatctgacgcgtcgtctg
gttgacgttgcacaggatctggttgttaccgaagatgactgtggtacacacgaaggcatc
atgatgacacctgtcatcgaaggtggcgatgttaaagagccactgcgtgaacgtgtactg
ggtcgtgtaaccgctgaagacgttctgaagccgggtactgctgacattctggttccacgc
aacacgctgctcgatgagcactggtgtgacgtgctggaactgaactcagtcgatagcctg
aaagtccgctcagtagtaggttgtgaaaccgactttggtgtgtgtgcgcattgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttatcgcggca
cagtccatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcacgtgcggctgctgaatccagcattcaggtgaagaacaaaggtaccatcaagctg
accaacgccaagtcggtaacgaactcggcaggcaagctggtgatcacctcgcgtaacgtt
gaactgaaaatgatcgacgaatttggtcgtaccaaagagagctataaagttccttatggt
tctaccatggcgaaaggtgatggtgagcaggttgcagcgggcgaaaccgtcgcaaactgg
gatccgcataccatgccagtcatcaccgaagtgggcggtttcattcgcttcacggacatg
gttgatggccagaccattacccgtcagacagatgacttaaccggtctttcttcgctggtg
gttctggacagtgctgaacgtactgcgggcggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccaacggcaacgacgttctgattccgggcaccgacatgccggctcagtacttc
ctgcctggtaaagcgattgttcagctggaagatggcgtgaagatcagtgctggtgacacg
ctggcgcgtgttccgcaggaatctggcggtaccaaggatattaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtcgtccgaaagagccagctattctggcggagatcagc
ggcatcatctccttcggtaaagagaccaaaggtaagcgtcgtctggtcatcactccgctg
gatggcagtgagccgtacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgttgagcgcggtgacgtggtttccgatggcccagagtctccacatgacatc
ctgcgcttgcgtggcgtgcatgcggtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagtcatcgttcgtcagatg
ctgcgtaaagcaaccatcgtgagcgcaggaagtgcagacttcctggaaggtgagcaggct
gaattctctcgcatcaagatctctaaccgtgatctggaagcgaacggaaaagttggcgca
accttcatgcgtgacctgctgggtattaccaaagcgtcactggctaccgaatcgttcatc
tctgcagcatcgttccaggaaaccacgcgtgtcctgaccgaagcagcagtagcaggtaag
cgcgatgaactgcgcggcctgaaagagaacgtgatcgtgggtcgtctgatcccggccggt
accggttatgcctaccatcaggatcgtatgcgccgcaaagcggcaggtgaagttccggtt
gcaccgcaggttactgcggatgaagcctcagccagcctggctgaactgttgaacgccggt
ctcggcggcaacaaagacgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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