KEGG   Providencia alcalifaciens: CO695_14315
Entry
CO695_14315       CDS       T05107                                 
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pala  Providencia alcalifaciens
Brite
KEGG Orthology (KO) [BR:pala00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pala03032]
    CO695_14315
   03400 DNA repair and recombination proteins [BR:pala03400]
    CO695_14315
Enzymes [BR:pala01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CO695_14315
DNA replication proteins [BR:pala03032]
 Prokaryotic type
  DNA Topoisomerases
   CO695_14315
DNA repair and recombination proteins [BR:pala03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CO695_14315
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF zf-C4_Topoisom Toprim Zn_ribbon_recom DUF2399 zf-TFIIB Zn_Tnp_IS1595
Other DBs
NCBI-ProteinID: ATG17416
UniProt: A0A9N7HSB0
Position
3039674..3042292
AA seq 872 aa
MGKALVIVESPAKAKTINKYLGSGYVVKSSVGHIRDLPKSGSGSQSGSPKSTGSSTDKAK
TDKTKKVKKDPQDALVKRMGIDPYHGWKANYQILPGKEKVVSELKALAADADHVYLATDL
DREGEAIAWHLREVIGGDDSRFSRVVFNEITKNAITQAFESPGELNIDRVNAQQARRFMD
RVVGYMVSPLLWKKVARGLSAGRVQSVAVRLIVEREREIKAFVPEEYWELHADLADKSAV
NLRLEVTSQSGKSFKPVNKVQTEAAVKLLEKARYQVIDREDKPTSSKPSAPFITSTLQQA
ASTRLSFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGAQYLPKDA
NVYTSKDNSQEAHEAIRPSNVDVLPDSLKDMENDAKRLYQLIWNQFVACQMTPAKYDSTT
LTVKAGDFELKAKGRTLRFDGWTRVMPALRKNDEDKTLPAIPVGAELSLVELLPSQHFTK
PPARFSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVKVENRRFYAEKMGEIVTDRLEE
NFNDLMNYDFTARMENQLDHVANHEAEWKAVLDEFFSDFSKQLDVAEKDPEEGGMRTNPM
VITSIVCPDCERHMGIRTASTGVFLGCSGYALPPKERCKKTINLIPEDEVLNILEGDDAE
TNALRAKRRCPKCGTAMDSYLIDNGRKLHVCGNNPACEGYEIEEGEFRIKGYDGPVIECD
KCGSEMHLKMGRFGKYMGCTNEECKNTRKILKSGEIAPPKEDPVPLPELPCEKSDAYFVL
RDGAAGVFLAANTFPKSRETRAPLVAELQRFKDRLPEKLAYLAEAPAQDEEGNPTVVRFS
RKTKQQYVSSEKDGKATGWSAFYVDGVWKAKE
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgggtaaagctcttgttatagtggagtccccggcaaaagccaaaacgatcaataagtat
cttggcagtggctacgttgtaaaaagcagcgtcggtcatattcgtgatctgccgaaaagc
ggctctggctcacaatccggctcaccaaagagtacaggctcatctaccgataaagcaaag
accgacaaaacgaaaaaagttaagaaggatcctcaagatgcgttagttaaacgtatgggg
atcgacccttatcatggttggaaggcgaattaccaaattttgccgggtaaggaaaaggtc
gtttctgaattaaaagcgttagccgcagatgctgaccacgtctacctcgcgacggacctt
gaccgcgaaggggaagcaattgcgtggcatttacgcgaagtgatcggtggtgatgactct
cgttttagtcgtgttgtgtttaacgaaatcactaaaaatgcgattactcaagcatttgaa
agcccaggtgaattgaatatcgaccgtgttaatgctcagcaagcacgtcgctttatggac
cgtgtcgttggttacatggtgtctccattattatggaaaaaagtggcacgtggattatca
gctgggcgtgtacagtctgttgcagtgagactgattgttgaacgcgaacgagaaattaaa
gcttttgttcctgaagaatattgggaactgcatgcggatttagcggataaaagcgccgtt
aatttacgcttagaagtgacttctcaatcaggaaaatcatttaaacctgttaataaagta
caaacagaagctgcggttaaattactggaaaaagcacgttatcaagtgattgatcgtgaa
gataaaccgacatccagtaaacccagcgcgccattcatcacatccacgctgcaacaagca
gcgagcactcgcttaagctttggtgtgaagaaaaccatgatgatggctcagcgtttgtat
gaagcaggttatattacctatatgcgtactgactcaaccaacttgagccaagacgcagta
aatatggttcgcggttatatttctgacaactttggtgcgcaatacttaccaaaagacgcg
aacgtttataccagtaaagataattcccaagaagcgcacgaagctattcgtccatccaat
gttgatgtgttgccagactcactaaaagacatggaaaacgatgcaaaacgtttataccag
ttgatttggaatcaatttgtggcttgtcaaatgacacctgcaaaatacgactctacaaca
ttaacggtgaaagcgggcgatttcgaattaaaagcgaaaggtcgcactttacgttttgat
ggttggacgagagtcatgccagcactgcgtaaaaatgacgaagataaaactttacctgcg
atcccagtaggcgctgagttatcgttggtagaattgttgccaagtcaacactttacgaag
ccaccagcacgctttagtgaagcatctttagttaaagaattagaaaaacgtgggattggt
cgaccgtcaacatatgcggctatcatttcgacgatccaagatcgtggctacgtgaaagta
gaaaaccgccggttctatgcggaaaaaatgggtgagatcgtcacggatcgtttggaagaa
aatttcaacgacttgatgaactatgactttactgcccgcatggaaaatcagttagaccat
gttgcgaatcatgaagccgagtggaaagcggttctggatgaattcttctctgactttagc
aagcaattagatgttgctgaaaaagaccctgaagaagggggaatgcgtaccaatccaatg
gttatcacgtcgattgtttgccctgactgtgaacgccatatgggaattcgtaccgcatca
acaggggtgttcttaggttgctccggctatgcactgccgccaaaagagcgctgtaagaaa
accattaatctgatccctgaagatgaagttcttaacatccttgaaggcgatgatgccgaa
accaacgccttaagagcaaaacgtcgttgtccaaaatgtggcaccgcgatggatagctac
ttaatcgataatggtcgtaaactccatgtttgtggtaataacccagcatgtgaaggctat
gaaatcgaagagggcgagttccgcatcaaaggttacgatggtccggtgatcgaatgcgac
aaatgcggttctgaaatgcacctgaaaatggggcgttttggcaaatacatgggttgtacc
aacgaagagtgtaaaaatactcgcaagatcttaaaaagtggtgaaattgcaccgcctaaa
gaagatccagtaccgttaccagaactaccatgtgaaaaatcagatgcttatttcgtgcta
cgtgatggcgctgccggtgttttccttgcggcaaatacgttcccgaaatcaagggaaact
cgcgcaccattagtggcagaactgcaacgatttaaagacagactaccagaaaaattggcg
tatttagcggaagcaccagcgcaagacgaagaaggtaacccaacagtggttcgctttagc
cgtaaaacgaaacagcaatatgtttcgtcagagaaagacggtaaggcaacaggttggagt
gctttttatgtggatggtgtttggaaagccaaagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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