KEGG   Pantoea alhagi: B1H58_19655
Entry
B1H58_19655       CDS       T05014                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
palh  Pantoea alhagi
Pathway
palh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:palh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    B1H58_19655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:palh03400]
    B1H58_19655
Enzymes [BR:palh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     B1H58_19655
DNA repair and recombination proteins [BR:palh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      B1H58_19655
SSDB
Motif
Pfam: TRCF DEAD MFD_D3 UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H SNF2-rel_dom ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: ARJ44041
UniProt: A0A1W6BAG5
Position
4112656..4116099
AA seq 1147 aa
MPEQIRYALPAAANDQRQLGQLTGAACAVECAEIAERHPGLVMLIAPDMQTSLRLQDEIQ
QFTHQPVLSLADWETLPFDSFSPHQDIISSRLSTLYRLPTLERGVLILPVTTLMQRYCPH
DFLHGHALVMHKGQLLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RIDFFDNEIDSLRLFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWREHFDVRRE
PEHIYQQVSKGTLPAGIEYWQPLFFEQPLVPLFSYLPRDTLVVSTGDLEASAERFWQDIM
ARFENRRVDPMRPLLPPESLWLRTDGLFAELKQWPRIRMNSEALPDKAANTNLNYQLLPP
LAVEPQAKAPLDNLRHFLEAFDGAVIFSVESEGRREALQELLARIKLQPKVIQRLSEAFA
PGRYLIIGASERGFVDNLRHRALICEGDLLGERVTRRRQDTRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGMTTLEAGGIKAEYLMLAYANDARLYVPVSSLHLISRYAGGADENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKYDREQYQLFCDSFPFE
TTPDQAQAIHAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQASEGKIDILIGTHKLLMSDLKW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLADLVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPPPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTSNQTDIELRMPALLPDDFIPDV
STRLSFYKRIASSQDKSELEDLKVELIDRFGNLPDAARNLLDVAALRLMAKKIGIRRVEA
SDKGGFIEFDEKNKADPGWLIGLMQKEPQNWRLDGPARLKFIRDLSEPKLRMKWVREFMD
QILDNAA
NT seq 3444 nt   +upstreamnt  +downstreamnt
atgcctgaacagattcgctatgccctgcccgctgcggcaaacgatcaacgccagctggga
cagctaaccggcgccgcctgcgccgttgaatgtgcggaaatcgccgagcgtcacccgggg
ctggtgatgctgattgcgcctgatatgcaaacctcgctgcgcctgcaggatgaaattcaa
cagtttacccaccagccggttttgagcctcgctgactgggaaaccctgccgttcgacagc
ttctctccacatcaggatattatctcttcacgtctgtcgacgctctatcgcctgccgacg
ctggaacgcggcgtgttgatcctgccggtgaccacattgatgcagcgttactgtccgcac
gatttcctgcacggtcatgcgctggtgatgcataaagggcagctgctgtcacgcgaccgg
ctgcgggaccagctggaacaggcgggctatcgtcatgtcgatcaggtcatggaacatggt
gaatatgccacgcgcggcgcgctgctcgatctgtttcccatgggcagcgaacagccctat
cgcatcgactttttcgacaatgaaatcgacagcctgcggctgtttgacgtcgacagccag
cgcacgctggaagaggtggaggcgattaacctgttgcccgctcatgagtttcccactgat
aaagccgccattgagctgtttcgcagccagtggcgcgaacatttcgatgtacgccgcgag
ccggaacatatctatcagcaggtgagtaaaggcaccctgcccgccggtattgagtactgg
caaccgctgttttttgaacagccgctggtgccgctgttcagctatctgccgcgcgatacg
ctggtggtcagtacgggcgatctggaagccagcgcagagcgcttctggcaggacatcatg
gcgcgttttgaaaaccgccgcgtggatccgatgcgcccgctgctgccgccggagtcgctg
tggctgcgcaccgatggtctgttcgccgaattgaaacagtggccgcgcatccgtatgaac
agcgaggcgttgcccgataaagcggccaacaccaacctgaattatcaactgctgccgccg
ctggcggtagagcctcaggccaaagcgccactggataacctgcgccatttccttgaggca
ttcgatggtgcggtgatcttctcggtggaaagcgaaggtcgccgcgaggcgttacaggag
ctgttggcacgcatcaagctacagccgaaggtgattcagcgcctgagcgaagcttttgcc
ccgggccgttatctgatcatcggtgccagcgagcgcggctttgttgataatctgcgccat
cgcgccctgatctgcgaaggcgatttgctgggtgagcgcgtgacgcgtcgtcgccaggat
acccgccgtaccattaatcccgatgtgctgatccgcaacctggcagagctgcatcccggc
cagccggtggtgcatctggagcatggcgtggggcgctatatcggcatgaccacgctggaa
gcgggcggcatcaaggcggaatatctaatgctggcctacgccaatgacgccaggctgtac
gtgccggtctcttcgctgcatctgatcagccgttacgctggcggtgctgatgaaaatgcg
ccgctgcataagctgggcagcgatgcctggtcacgggcgcgtcagaaggcggcagagaaa
gtgcgcgacgtggcggcagagctgctggatatttatgcacagcgcgccgctaaggctggc
tacgcctttaagtacgatcgtgagcagtatcaactgttctgtgacagtttcccgtttgaa
accacaccggaccaggcacaggcgatccatgccgtattgagcgatatgtgtcagccgctg
gcgatggatcgtctggtgtgcggcgatgtgggctttggtaaaaccgaagtggcgatgcgc
gcggcgtttctggcagtagagaataataaacaggtggcggtgctggtgcctactaccctg
cttgcccagcagcactatgataatttccgcgatcgcttcgcgaactggccggtgcgcatc
gaaatgctttcccgcttccgcagcgccaaagaacaggcgcagatactggagcaggccagc
gaaggcaagatcgatattttgatcggcacccataaactgctgatgagcgatctgaagtgg
cacgacctggggctgctgattgttgatgaggagcaccgctttggcgtgcgccataaagaa
cgtattaaagcgatgcgtgctgacgtcgatattctgacgttaaccgccacgccgatcccg
cgaacgctgaatatggcgatgagtggcatgcgcgatctgtcgattatcgctacgccgccc
gcgcgtcgcctggcggtgaaaacgtttgtgcgggaatatgacagtctggtggtgcgtgag
gcgatcctgcgcgaagtgctgcgcggcggccaggtttattatctgtataacgatgtggaa
aatatcgaaaaagcggcccagcggctggcggatctggtgccggaagcgcgcatcgccatt
ggtcacgggcagatgcgcgagcgcgatctggagcgggtgatgaatgatttccatcatcag
cgttttaacgtgctggtctgtaccaccattatcgaaaccggtatcgatatccctaccgcc
aataccatcatcattgagcgcgccgatcactttggcctggcgcagctgcaccagctacgc
gggcgcgtaggccgttcacatcaccaggcctatgcatggctactgacgccgccgccgaaa
gcgatgactaccgatgcgcataaacgcctggaggcgatcgcctcgctggaggatctgggc
gcgggcttcgcgctggccacgcatgacttagaaatccgtggcgcaggcgagctgctggga
gaggatcagagcggccagatggaaactatcggcttctcactctatatggagctgctggaa
aatgccgtggatgcgttgaaagagggtcgcgagccttcgctggaagatctgaccagcaat
cagaccgatatcgaactgcgtatgccagcgctgctgcctgatgattttattcctgatgtc
agtacgcggctctctttttacaagcgtatcgccagctcacaggataaaagcgagctggag
gatctgaaggttgaactgattgaccgctttggtaatcttcccgatgcagctcgtaacctg
ttggatgtcgctgcactccgtctgatggcgaaaaaaattggcatccggcgcgtggaggcc
agcgataaaggtggctttatcgagtttgatgagaaaaataaagctgacccgggctggctg
attggcctgatgcaaaaagagccgcagaactggcgtcttgacggtccagccaggctgaag
tttattcgcgatctgagcgagccaaagttacggatgaaatgggtgcgggagtttatggat
cagattctggataatgcggcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system