KEGG   PATHWAY: amb00020
Entry
amb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas macleodii Balearic Sea AD45
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amb00020  Citrate cycle (TCA cycle)
amb00020

Module
amb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amb00020]
amb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amb00020]
amb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amb00020]
amb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amb00020]
amb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amb00020]
Other DBs
GO: 0006099
Organism
Alteromonas macleodii Balearic Sea AD45 [GN:amb]
Gene
AMBAS45_09635  citrate synthase [KO:K01647] [EC:2.3.3.1]
AMBAS45_01630  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AMBAS45_03365  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMBAS45_03395  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMBAS45_09085  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AMBAS45_04620  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AMBAS45_09660  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AMBAS45_09665  dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AMBAS45_14535  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMBAS45_09675  Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AMBAS45_09670  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AMBAS45_09650  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AMBAS45_09655  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
AMBAS45_09640  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
AMBAS45_09645  putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC [KO:K00242]
AMBAS45_09965  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AMBAS45_15495  fumarase [KO:K01679] [EC:4.2.1.2]
AMBAS45_16780  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMBAS45_19150  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AMBAS45_14545  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
AMBAS45_14540  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amb00010  Glycolysis / Gluconeogenesis
amb00053  Ascorbate and aldarate metabolism
amb00061  Fatty acid biosynthesis
amb00071  Fatty acid degradation
amb00190  Oxidative phosphorylation
amb00220  Arginine biosynthesis
amb00250  Alanine, aspartate and glutamate metabolism
amb00280  Valine, leucine and isoleucine degradation
amb00350  Tyrosine metabolism
amb00470  D-Amino acid metabolism
amb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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