KEGG   PATHWAY: apn00630
Entry
apn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudarthrobacter phenanthrenivorans
Class
Metabolism; Carbohydrate metabolism
Pathway map
apn00630  Glyoxylate and dicarboxylate metabolism
apn00630

Module
apn_M00621  Glycine cleavage system [PATH:apn00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudarthrobacter phenanthrenivorans [GN:apn]
Gene
Asphe3_06080  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Asphe3_32980  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Asphe3_00720  acyl-CoA synthetase/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]
Asphe3_33490  malate synthase A [KO:K01638] [EC:2.3.3.9]
Asphe3_30800  malate synthase A [KO:K01638] [EC:2.3.3.9]
Asphe3_06070  malate synthase A [KO:K01638] [EC:2.3.3.9]
Asphe3_26730  citrate synthase [KO:K01647] [EC:2.3.3.1]
Asphe3_16180  aconitase [KO:K01681] [EC:4.2.1.3]
Asphe3_28310  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Asphe3_18660  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Asphe3_18290  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Asphe3_05390  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Asphe3_12900  acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Asphe3_12820  acetyl/propionyl-CoA carboxylase, alpha subunit [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Asphe3_06680  acetyl/propionyl-CoA carboxylase, alpha subunit [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Asphe3_30780  glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Asphe3_07820  glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Asphe3_29090  catalase [KO:K03781] [EC:1.11.1.6]
Asphe3_11330  catalase [KO:K03781] [EC:1.11.1.6]
Asphe3_17990  putative phosphatase [KO:K01091] [EC:3.1.3.18]
Asphe3_15720  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Asphe3_15760  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Asphe3_02160  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Asphe3_11490  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Asphe3_34220  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Asphe3_08000  glycine dehydrogenase (decarboxylating) beta subunit; glycine dehydrogenase (decarboxylating) alpha subunit [KO:K00281] [EC:1.4.4.2]
Asphe3_34250  glycine dehydrogenase (decarboxylating) beta subunit; glycine dehydrogenase (decarboxylating) alpha subunit [KO:K00281] [EC:1.4.4.2]
Asphe3_08010  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Asphe3_34240  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Asphe3_15880  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Asphe3_34230  glycine cleavage system H protein [KO:K02437]
Asphe3_15220  glycine cleavage system H protein [KO:K02437]
Asphe3_35760  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Asphe3_01680  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Asphe3_08720  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Asphe3_35740  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Asphe3_35750  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Asphe3_02520  glycerate kinase [KO:K00865] [EC:2.7.1.165]
Asphe3_01110  glycerate kinase [KO:K00865] [EC:2.7.1.165]
Asphe3_35770  glycerate kinase [KO:K00865] [EC:2.7.1.165]
Asphe3_25090  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Asphe3_02280  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Asphe3_02100  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Asphe3_11480  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
apn00010  Glycolysis / Gluconeogenesis
apn00020  Citrate cycle (TCA cycle)
apn00030  Pentose phosphate pathway
apn00053  Ascorbate and aldarate metabolism
apn00071  Fatty acid degradation
apn00230  Purine metabolism
apn00250  Alanine, aspartate and glutamate metabolism
apn00260  Glycine, serine and threonine metabolism
apn00620  Pyruvate metabolism
apn00750  Vitamin B6 metabolism
apn00910  Nitrogen metabolism
KO pathway
ko00630   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG GENES (44)   
All databases (45)   

Download RDF
DBGET integrated database retrieval system