KEGG   PATHWAY: ara00630
Entry
ara00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium rhizogenes K84
Class
Metabolism; Carbohydrate metabolism
Pathway map
ara00630  Glyoxylate and dicarboxylate metabolism
ara00630

Module
ara_M00012  Glyoxylate cycle [PATH:ara00630]
ara_M00621  Glycine cleavage system [PATH:ara00630]
ara_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ara00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium rhizogenes K84 [GN:ara]
Gene
Arad_0071  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
Arad_0132  [KO:K01816] [EC:5.3.1.22]
Arad_0205  [KO:K00015] [EC:1.1.1.26]
Arad_0308  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Arad_0389  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Arad_0799  glnII; glutamine synthetase II protein [KO:K01915] [EC:6.3.1.2]
Arad_0815  fadA; acyl-CoA thiolase protein [KO:K00626] [EC:2.3.1.9]
Arad_0947  glnA1; glutamine synthetase protein [KO:K01915] [EC:6.3.1.2]
Arad_1035  glcD; glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Arad_1036  glcE; glycolate oxidase subunit E protein [KO:K11472] [EC:1.1.99.14]
Arad_1037  glcF; glycolate oxidase subunit F protein [KO:K11473] [EC:1.1.99.14]
Arad_1091  [KO:K01091] [EC:3.1.3.18]
Arad_12372  [KO:K11529] [EC:2.7.1.165]
Arad_1385  bhbA; methylmalonyl-CoA mutase protein [KO:K01847] [EC:5.4.99.2]
Arad_1386  bhbA; methylmalonyl-CoA mutase protein [KO:K01847] [EC:5.4.99.2]
Arad_1528  [KO:K01915] [EC:6.3.1.2]
Arad_1752  glyA; serine hydroxymethyltransferase 1 protein [KO:K00600] [EC:2.1.2.1]
Arad_1868  [KO:K05606] [EC:5.1.99.1]
Arad_2050  gph1; phosphoglycolate phosphatase protein [KO:K01091] [EC:3.1.3.18]
Arad_2236  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
Arad_2251  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Arad_2372  glnA2; glutamine synthetase protein [KO:K01915] [EC:6.3.1.2]
Arad_2445  cisZ; citrate synthase protein [KO:K01647] [EC:2.3.3.1]
Arad_2446  [KO:K01647] [EC:2.3.3.1]
Arad_2508  [KO:K01965] [EC:6.4.1.3]
Arad_2516  pccB; propionyl-CoA carboxylase beta chain protein [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Arad_2519  gph1; phosphoglycolate phosphatase protein [KO:K01091] [EC:3.1.3.18]
Arad_2525  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Arad_2526  gcvH; glycine cleavage system H protein [KO:K02437]
Arad_2527  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Arad_2688  gph; phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
Arad_3043  glnA3; glutamine synthetase protein [KO:K01915] [EC:6.3.1.2]
Arad_3557  [KO:K00042] [EC:1.1.1.60]
Arad_3582  ttuD; hydroxypyruvate reductase protein [KO:K11529] [EC:2.7.1.165]
Arad_3917  eda; 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Arad_4164  [KO:K01895] [EC:6.2.1.1]
Arad_4282  fdsD; NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
Arad_4285  fdhA; formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Arad_4286  fdsB; formate dehydrogenase [KO:K00124]
Arad_4287  fdsG; formate dehydrogenase [KO:K00127]
Arad_4324  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Arad_4338  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Arad_4394  acnA; aconitate hydratase 1 [KO:K27802]
Arad_4554  [KO:K00626] [EC:2.3.1.9]
Arad_4680  phbB; acetoacetyl-CoA reductase protein [KO:K00023] [EC:1.1.1.36]
Arad_4682  phbAch; acetyl-CoA acetyltransferase (beta-ketothiolase) protein [KO:K00626] [EC:2.3.1.9]
Arad_4932  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Arad_7092  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Arad_7183  [KO:K01569] [EC:4.1.1.2]
Arad_7339  [KO:K03781] [EC:1.11.1.6]
Arad_7363  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Arad_7659  ttuD; hydroxypyruvate reductase protein [KO:K11529] [EC:2.7.1.165]
Arad_7660  [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Arad_8221  phbB; acetoacetyl-CoA reductase protein [KO:K00023] [EC:1.1.1.36]
Arad_8367  glnT; glutamine synthetase III protein [KO:K01915] [EC:6.3.1.2]
Arad_8369  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Arad_8372  [KO:K00605] [EC:2.1.2.10]
Arad_8379  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Arad_8429  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
Arad_8533  [KO:K01816] [EC:5.3.1.22]
Arad_8585  accCch; acetyl-CoA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
Arad_8728  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Arad_9166  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Arad_9169  [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Arad_9669  [KO:K00042] [EC:1.1.1.60]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ara00010  Glycolysis / Gluconeogenesis
ara00020  Citrate cycle (TCA cycle)
ara00030  Pentose phosphate pathway
ara00053  Ascorbate and aldarate metabolism
ara00071  Fatty acid degradation
ara00230  Purine metabolism
ara00250  Alanine, aspartate and glutamate metabolism
ara00260  Glycine, serine and threonine metabolism
ara00270  Cysteine and methionine metabolism
ara00620  Pyruvate metabolism
ara00710  Carbon fixation by Calvin cycle
ara00750  Vitamin B6 metabolism
ara00910  Nitrogen metabolism
KO pathway
ko00630   

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