KEGG   PATHWAY: bbh00020
Entry
bbh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bordetella bronchiseptica 253
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbh00020  Citrate cycle (TCA cycle)
bbh00020

Module
bbh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bbh00020]
bbh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbh00020]
bbh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbh00020]
bbh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbh00020]
bbh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbh00020]
Other DBs
GO: 0006099
Organism
Bordetella bronchiseptica 253 [GN:bbh]
Gene
BN112_0624  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
BN112_4739  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BN112_2117  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BN112_1671  acnA; putative aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BN112_1665  acnB; putative aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BN112_4492  icdA; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BN112_4747  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BN112_4748  odhB; 2-oxoglutarate dehydrogenase complex, E2 component [KO:K00658] [EC:2.3.1.61]
BN112_0812  putative pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BN112_0355  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN112_4749  odhL; 2-oxoglutarate dehydrogenase complex, E3 component [KO:K00382] [EC:1.8.1.4]
BN112_3728  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN112_1435  sucD; succinyl-CoA synthetase, alpha chain [KO:K01902] [EC:6.2.1.5]
BN112_1436  sucC; Succinyl-CoA synthetase, beta chain [KO:K01903] [EC:6.2.1.5]
BN112_1654  putative acyl-CoA transferase [KO:K18118] [EC:2.8.3.18]
BN112_4736  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BN112_4737  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BN112_4734  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
BN112_4735  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BN112_4322  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BN112_3058  putative dehydratase [KO:K01677] [EC:4.2.1.2]
BN112_3059  conserved hypothetical protein [KO:K01678] [EC:4.2.1.2]
BN112_4349  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BN112_4732  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN112_2829  putative pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BN112_0259  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
BN112_0353  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BN112_4744  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BN112_0354  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BN112_3720  probable 2-oxo acid dehydrogenases acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbh00010  Glycolysis / Gluconeogenesis
bbh00053  Ascorbate and aldarate metabolism
bbh00061  Fatty acid biosynthesis
bbh00071  Fatty acid degradation
bbh00190  Oxidative phosphorylation
bbh00220  Arginine biosynthesis
bbh00250  Alanine, aspartate and glutamate metabolism
bbh00280  Valine, leucine and isoleucine degradation
bbh00350  Tyrosine metabolism
bbh00470  D-Amino acid metabolism
bbh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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