KEGG   PATHWAY: bgd00920
Entry
bgd00920                    Pathway                                
Name
Sulfur metabolism - Burkholderia gladioli BSR3
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bgd00920  Sulfur metabolism
bgd00920

Module
bgd_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:bgd00920]
Other DBs
GO: 0006790
Organism
Burkholderia gladioli BSR3 [GN:bgd]
Gene
bgla_1g36440  ABC-type sulfate transport system, periplasmic component [KO:K02048]
bgla_1g19020  Thiosulphate-binding protein [KO:K23163]
bgla_1g19030  sulfate ABC transporter, inner membrane subunit CysT [KO:K02046]
bgla_1g19040  Sulfate ABC transporter, inner membrane subunit CysW [KO:K02047]
bgla_1g19050  ABC transporter [KO:K02045] [EC:7.3.2.3]
bgla_1g35720  ABC-type taurine transport system, periplasmic component [KO:K15551]
bgla_1g35700  ABC taurine transporter, inner membrane subunit [KO:K15552]
bgla_1g35710  ABC taurine transporter, ATPase subunit [KO:K10831] [EC:7.6.2.7]
bgla_2g19290  hypothetical protein [KO:K15553]
bgla_2g23240  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein [KO:K15553]
bgla_2g11800  putative aliphatic sulfonates-binding protein [KO:K15553]
bgla_2g11930  Putative phosphorous compounds metabolism-related protein [KO:K15553]
bgla_2g11940  aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein [KO:K15553]
bgla_2g17030  putative aliphatic sulfonates binding protein [KO:K15553]
bgla_2g29190  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
bgla_1g33620  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
bgla_1g16950  ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [KO:K15553]
bgla_2g23200  hypothetical protein [KO:K15553]
bgla_2g15280  ABC transporter substrate binding protein [KO:K15553]
bgla_1g18620  Binding-protein-dependent transport systems inner membrane component [KO:K15554]
bgla_2g19300  binding-protein-dependent transport systems inner membrane component [KO:K15554]
bgla_2g23210  putative sulfonates ABC transporter permease [KO:K15554]
bgla_2g15300  Binding-protein-dependent transport systems inner membrane component [KO:K15554]
bgla_1g18630  Aliphatic sulfonates ABC transporter, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
bgla_2g15290  ABC transporter related protein [KO:K15555] [EC:7.6.2.14]
bgla_2g23220  ABC transporter related protein [KO:K15555] [EC:7.6.2.14]
bgla_1g18610  Methanesulfonate sulfonatase, FMNH2-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
bgla_4p2860  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
bgla_2g23180  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
bgla_1g19690  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
bgla_2g16140  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
bgla_2g06210  NADPH-dependent FMN reductase family protein [KO:K00299] [EC:1.5.1.38]
bgla_1g31650  Sulfate adenylyltransferase, subunit 1 [KO:K00956] [EC:2.7.7.4]
bgla_1g31660  sulfate adenylyltransferase, small subunit [KO:K00957] [EC:2.7.7.4]
bgla_2g11990  Adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
bgla_1g31670  Adenylylsulfate reductase, thioredoxin dependent [KO:K00390] [EC:1.8.4.8 1.8.4.10]
bgla_2g16260  putative oxidoreductase [KO:K17225]
bgla_2g16270  putative cytochrome c [KO:K22622] [EC:1.8.2.6]
bgla_2g16770  Bifunctional reductase [KO:K00380] [EC:1.8.1.2]
bgla_1g31690  Nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
bgla_2g04510  nitrite/sulfite reductase hemoprotein beta subunit [KO:K00381] [EC:1.8.1.2]
bgla_1g22410  Oxidoreductase, pyridine nucleotide-disulfide family protein [KO:K17218] [EC:1.8.5.4]
bgla_2g21340  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
bgla_1g26570  Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
bgla_2g01170  Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
bgla_2g15720  putative homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
bgla_1g38050  Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
bgla_2g18050  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
bgla_2g09020  Luciferase-like monooxygenase [KO:K17228] [EC:1.14.14.35]
bgla_1g23740  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
bgla_2g14680  AMP-binding enzyme [KO:K20034] [EC:6.2.1.44]
bgla_1g09810  Acyl-CoA dehydrogenase-like protein [KO:K20035] [EC:1.3.99.41]
bgla_1g34290  Acyl-CoA dehydrogenase domain protein [KO:K20035] [EC:1.3.99.41]
bgla_2g28180  enoyl-CoA hydratase/isomerase [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bgd00260  Glycine, serine and threonine metabolism
bgd00270  Cysteine and methionine metabolism
bgd00680  Methane metabolism
KO pathway
ko00920   

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