KEGG   PATHWAY: bnm00020
Entry
bnm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bifidobacterium animalis subsp. lactis CNCM I-2494
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bnm00020  Citrate cycle (TCA cycle)
bnm00020

Module
bnm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bnm00020]
Other DBs
GO: 0006099
Organism
Bifidobacterium animalis subsp. lactis CNCM I-2494 [GN:bnm]
Gene
BALAC2494_00587  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BALAC2494_00108  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BALAC2494_00362  Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BALAC2494_00423  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BALAC2494_00306  Succinate--CoA ligase (ADP-forming) [KO:K01902] [EC:6.2.1.5]
BALAC2494_00305  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
BALAC2494_00175  Succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
BALAC2494_00174  Succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bnm00010  Glycolysis / Gluconeogenesis
bnm00053  Ascorbate and aldarate metabolism
bnm00061  Fatty acid biosynthesis
bnm00071  Fatty acid degradation
bnm00190  Oxidative phosphorylation
bnm00220  Arginine biosynthesis
bnm00250  Alanine, aspartate and glutamate metabolism
bnm00280  Valine, leucine and isoleucine degradation
bnm00350  Tyrosine metabolism
bnm00470  D-Amino acid metabolism
bnm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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