KEGG   PATHWAY: bsb03430
Entry
bsb03430                    Pathway                                
Name
Mismatch repair - Brevundimonas subvibrioides
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bsb03430  Mismatch repair
bsb03430

Other DBs
GO: 0006298
Organism
Brevundimonas subvibrioides [GN:bsb]
Gene
Bresu_0293  DNA mismatch repair protein MutS [KO:K03555]
Bresu_2382  DNA mismatch repair protein MutL [KO:K03572]
Bresu_2166  UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
Bresu_1846  exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
Bresu_2794  exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
Bresu_2882  Exonuclease RNase T and DNA polymerase III [KO:K10857] [EC:3.1.11.-]
Bresu_1912  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Bresu_2631  single-strand binding protein [KO:K03111]
Bresu_2505  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Bresu_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Bresu_0592  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Bresu_0374  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Bresu_1993  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Bresu_0357  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Bresu_2578  DNA polymerase III chi subunit HolC [KO:K02339] [EC:2.7.7.7]
Bresu_1627  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Bresu_1408  D12 class N6 adenine-specific DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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