KEGG   PATHWAY: cad00020
Entry
cad00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gottschalkia acidurici
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cad00020  Citrate cycle (TCA cycle)
cad00020

Module
cad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cad00020]
cad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cad00020]
Other DBs
GO: 0006099
Organism
Gottschalkia acidurici [GN:cad]
Gene
Curi_c11840  (Re)-citrate synthase [KO:K05942] [EC:2.3.3.3]
Curi_c11850  aco; aconitate hydratase Aco [KO:K01681] [EC:4.2.1.3]
Curi_c28890  idh; NADP-dependend isocitrate dehydrogenase Idh [KO:K00031] [EC:1.1.1.42]
Curi_c09790  lpd; dihydrolipoamide dehydrogenase Lpd [KO:K00382] [EC:1.8.1.4]
Curi_c01060  ttdA; putative L(+)-tartrate dehydratase, subunit alpha [KO:K01677] [EC:4.2.1.2]
Curi_c01070  ttdB; putative L(+)-tartrate dehydratase, subunit beta [KO:K01678] [EC:4.2.1.2]
Curi_c11880  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
Curi_c20330  por1; pyruvate:ferredoxin oxidoreductase Por [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Curi_c21330  por2; pyruvate:ferredoxin oxidoreductase Por [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cad00010  Glycolysis / Gluconeogenesis
cad00061  Fatty acid biosynthesis
cad00071  Fatty acid degradation
cad00190  Oxidative phosphorylation
cad00220  Arginine biosynthesis
cad00250  Alanine, aspartate and glutamate metabolism
cad00280  Valine, leucine and isoleucine degradation
cad00350  Tyrosine metabolism
cad00470  D-Amino acid metabolism
cad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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