KEGG   PATHWAY: ccs00020
Entry
ccs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caulobacter vibrioides NA1000
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccs00020  Citrate cycle (TCA cycle)
ccs00020

Module
ccs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccs00020]
ccs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccs00020]
ccs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccs00020]
ccs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccs00020]
Other DBs
GO: 0006099
Organism
Caulobacter vibrioides NA1000 [GN:ccs]
Gene
CCNA_03757  citrate synthase [KO:K01647] [EC:2.3.3.1]
CCNA_03758  citrate synthase [KO:K01647] [EC:2.3.3.1]
CCNA_01983  citrate synthase [KO:K01647] [EC:2.3.3.1]
CCNA_03781  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CCNA_02607  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CCNA_00342  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CCNA_00343  odhB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CCNA_01805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCNA_00346  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCNA_00341  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
CCNA_00340  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
CCNA_03840  succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CCNA_03642  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CCNA_03641  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CCNA_03644  sdhC; succinate dehydrogenase cytochrome B-556 subunit [KO:K00241]
CCNA_03643  succinate dehydrogenase membrane anchor subunit [KO:K00242]
CCNA_02194  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CCNA_03770  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CCNA_01263  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CCNA_01799  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
CCNA_01800  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
CCNA_01803  pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccs00010  Glycolysis / Gluconeogenesis
ccs00053  Ascorbate and aldarate metabolism
ccs00061  Fatty acid biosynthesis
ccs00071  Fatty acid degradation
ccs00190  Oxidative phosphorylation
ccs00220  Arginine biosynthesis
ccs00250  Alanine, aspartate and glutamate metabolism
ccs00280  Valine, leucine and isoleucine degradation
ccs00350  Tyrosine metabolism
ccs00470  D-Amino acid metabolism
ccs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system