KEGG   PATHWAY: dvl00970
Entry
dvl00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Nitratidesulfovibrio vulgaris DP4
Class
Genetic Information Processing; Translation
Pathway map
dvl00970  Aminoacyl-tRNA biosynthesis
dvl00970

Organism
Nitratidesulfovibrio vulgaris DP4 [GN:dvl]
Gene
Dvul_R0086  tRNA-Ala [KO:K14218]
Dvul_R0087  tRNA-Ala [KO:K14218]
Dvul_R0007  tRNA-Ala [KO:K14218]
Dvul_R0076  tRNA-Ala [KO:K14218]
Dvul_R0030  tRNA-Ala [KO:K14218]
Dvul_R0083  tRNA-Ala [KO:K14218]
Dvul_R0023  tRNA-Ala [KO:K14218]
Dvul_R0035  tRNA-Ala [KO:K14218]
Dvul_R0001  tRNA-Arg [KO:K14219]
Dvul_R0046  tRNA-Arg [KO:K14219]
Dvul_R0052  tRNA-Arg [KO:K14219]
Dvul_R0051  tRNA-Arg [KO:K14219]
Dvul_R0053  tRNA-Arg [KO:K14219]
Dvul_R0018  tRNA-Arg [KO:K14219]
Dvul_R0033  tRNA-Asn [KO:K14220]
Dvul_R0034  tRNA-Asn [KO:K14220]
Dvul_R0072  tRNA-Asp [KO:K14221]
Dvul_R0071  tRNA-Asp [KO:K14221]
Dvul_R0040  tRNA-Cys [KO:K14222]
Dvul_R0012  tRNA-Gln [KO:K14223]
Dvul_R0050  tRNA-Gln [KO:K14223]
Dvul_R0011  tRNA-Glu [KO:K14224]
Dvul_R0066  tRNA-Glu [KO:K14224]
Dvul_R0067  tRNA-Glu [KO:K14224]
Dvul_R0036  tRNA-Gly [KO:K14225]
Dvul_R0039  tRNA-Gly [KO:K14225]
Dvul_R0041  tRNA-Gly [KO:K14225]
Dvul_R0038  tRNA-Gly [KO:K14225]
Dvul_R0015  tRNA-Gly [KO:K14225]
Dvul_R0002  tRNA-His [KO:K14226]
Dvul_R0006  tRNA-Ile [KO:K14227]
Dvul_R0084  tRNA-Ile [KO:K14227]
Dvul_R0029  tRNA-Ile [KO:K14227]
Dvul_R0077  tRNA-Ile [KO:K14227]
Dvul_R0022  tRNA-Ile [KO:K14227]
Dvul_R0057  tRNA-Leu [KO:K14228]
Dvul_R0019  tRNA-Leu [KO:K14228]
Dvul_R0047  tRNA-Leu [KO:K14228]
Dvul_R0044  tRNA-Leu [KO:K14228]
Dvul_R0026  tRNA-Leu [KO:K14228]
Dvul_R0068  tRNA-Leu [KO:K14228]
Dvul_R0080  tRNA-Leu [KO:K14228]
Dvul_R0060  tRNA-Lys [KO:K14229]
Dvul_R0061  tRNA-Lys [KO:K14229]
Dvul_R0079  tRNA-Lys [KO:K14229]
Dvul_R0048  tRNA-Met [KO:K14230]
Dvul_R0043  tRNA-Met [KO:K14230]
Dvul_R0069  tRNA-Met [KO:K14230]
Dvul_R0055  tRNA-Met [KO:K14230]
Dvul_R0003  tRNA-Phe [KO:K14231]
Dvul_R0010  tRNA-Pro [KO:K14232]
Dvul_R0042  tRNA-Pro [KO:K14232]
Dvul_R0049  tRNA-Pro [KO:K14232]
Dvul_R0054  tRNA-Ser [KO:K14233]
Dvul_R0062  tRNA-Ser [KO:K14233]
Dvul_R0065  tRNA-Ser [KO:K14233]
Dvul_R0063  tRNA-Ser [KO:K14233]
Dvul_R0059  tRNA-Thr [KO:K14234]
Dvul_R0070  tRNA-Thr [KO:K14234]
Dvul_R0017  tRNA-Thr [KO:K14234]
Dvul_R0014  tRNA-Thr [KO:K14234]
Dvul_R0013  tRNA-Trp [KO:K14235]
Dvul_R0016  tRNA-Tyr [KO:K14236]
Dvul_R0027  tRNA-Val [KO:K14237]
Dvul_R0073  tRNA-Val [KO:K14237]
Dvul_R0004  tRNA-Val [KO:K14237]
Dvul_R0058  tRNA-Sec [KO:K14238]
Dvul_1396  glutamyl-tRNA synthetase, class Ic [KO:K01885] [EC:6.1.1.17]
Dvul_0696  glutamyl-tRNA synthetase [KO:K01885] [EC:6.1.1.17]
Dvul_2169  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
Dvul_1279  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [KO:K02434] [EC:6.3.5.6 6.3.5.7]
Dvul_2168  aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [KO:K02435] [EC:6.3.5.6 6.3.5.7]
Dvul_0417  glutaminyl-tRNA synthetase [KO:K01886] [EC:6.1.1.18]
Dvul_1906  alanyl-tRNA synthetase [KO:K01872] [EC:6.1.1.7]
Dvul_0028  aspartyl-tRNA synthetase [KO:K01876] [EC:6.1.1.12]
Dvul_0001  asparaginyl-tRNA synthetase [KO:K01893] [EC:6.1.1.22]
Dvul_1265  glycyl-tRNA synthetase alpha chain [KO:K01878] [EC:6.1.1.14]
Dvul_1266  glycyl-tRNA synthetase beta chain [KO:K01879] [EC:6.1.1.14]
Dvul_0707  Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [KO:K01868] [EC:6.1.1.3]
Dvul_2740  seryl-tRNA synthetase [KO:K01875] [EC:6.1.1.11]
Dvul_0482  L-seryl-tRNA(Sec) selenium transferase [KO:K01042] [EC:2.9.1.1]
Dvul_1554  cysteinyl-tRNA synthetase [KO:K01883] [EC:6.1.1.16]
Dvul_1171  methionyl-tRNA synthetase [KO:K01874] [EC:6.1.1.10]
Dvul_0030  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
Dvul_0373  formyl transferase domain protein [KO:K00604] [EC:2.1.2.9]
Dvul_2238  valyl-tRNA synthetase [KO:K01873] [EC:6.1.1.9]
Dvul_1861  leucyl-tRNA synthetase [KO:K01869] [EC:6.1.1.4]
Dvul_1240  Isoleucyl-tRNA synthetase [KO:K01870] [EC:6.1.1.5]
Dvul_0888  lysyl-tRNA synthetase [KO:K04567] [EC:6.1.1.6]
Dvul_1814  arginyl-tRNA synthetase [KO:K01887] [EC:6.1.1.19]
Dvul_1723  prolyl-tRNA synthetase [KO:K01881] [EC:6.1.1.15]
Dvul_0027  histidyl-tRNA synthetase [KO:K01892] [EC:6.1.1.21]
Dvul_0711  phenylalanyl-tRNA synthetase, alpha subunit [KO:K01889] [EC:6.1.1.20]
Dvul_0712  phenylalanyl-tRNA synthetase beta subunit [KO:K01890] [EC:6.1.1.20]
Dvul_2033  tyrosyl-tRNA synthetase [KO:K01866] [EC:6.1.1.1]
Dvul_2825  tryptophanyl-tRNA synthetase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
dvl00250  Alanine, aspartate and glutamate metabolism
dvl00260  Glycine, serine and threonine metabolism
dvl00270  Cysteine and methionine metabolism
dvl00290  Valine, leucine and isoleucine biosynthesis
dvl00300  Lysine biosynthesis
dvl00330  Arginine and proline metabolism
dvl00340  Histidine metabolism
dvl00380  Tryptophan metabolism
dvl00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (96)   
   KEGG GENES (96)   
All databases (97)   

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