KEGG   PATHWAY: gmx00240
Entry
gmx00240                    Pathway                                
Name
Pyrimidine metabolism - Glycine max (soybean)
Class
Metabolism; Nucleotide metabolism
Pathway map
gmx00240  Pyrimidine metabolism
gmx00240

Module
gmx_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:gmx00240]
gmx_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gmx00240]
gmx_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gmx00240]
gmx_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gmx00240]
Other DBs
GO: 0006220 0006213
Organism
Glycine max (soybean) [GN:gmx]
Gene
100819867  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
100797877  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
100806168  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
100788470  uncharacterized protein LOC100788470 [KO:K01956] [EC:6.3.5.5]
100776931  carbamoyl-phosphate synthase small chain, chloroplastic isoform X1 [KO:K01956] [EC:6.3.5.5]
100802354  aspartate carbamoyltransferase 1, chloroplastic isoform X2 [KO:K00609] [EC:2.1.3.2]
100796746  aspartate carbamoyltransferase 2, chloroplastic isoform X2 [KO:K00609] [EC:2.1.3.2]
100815285  uncharacterized protein LOC100815285 [KO:K00609] [EC:2.1.3.2]
100787097  aspartate carbamoyltransferase 1, chloroplastic [KO:K00609] [EC:2.1.3.2]
100815210  dihydroorotase, mitochondrial-like [KO:K01465] [EC:3.5.2.3]
100804389  dihydroorotase, mitochondrial [KO:K01465] [EC:3.5.2.3]
100800054  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
100783159  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
100807008  uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
100780481  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
100500111  UMP-CMP kinase family protein [KO:K13800] [EC:2.7.4.14]
100306603  UMP/CMP kinase family protein [KO:K13800] [EC:2.7.4.14]
100806842  UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
100777369  UMP-CMP kinase isoform X1 [KO:K13800] [EC:2.7.4.14]
100800162  uridylate kinase [KO:K09903] [EC:2.7.4.22]
100781745  uridylate kinase [KO:K09903] [EC:2.7.4.22]
547870  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
100527141  NDPk domain-containing protein [KO:K00940] [EC:2.7.4.6]
100527475  uncharacterized protein LOC100527475 [KO:K00940] [EC:2.7.4.6]
547709  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
100500478  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
100811753  uncharacterized protein LOC100811753 [KO:K00940] [EC:2.7.4.6]
100799934  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
100786376  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
100807287  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
100780748  LOW QUALITY PROTEIN: probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
102665764  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
100806446  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
100786073  apyrase 2 [KO:K14641] [EC:3.6.1.5]
100804818  apyrase 1 [KO:K14641] [EC:3.6.1.5]
100787491  apyrase 2 [KO:K14641] [EC:3.6.1.5]
100784833  nucleoside-triphosphatase [KO:K14641] [EC:3.6.1.5]
100781628  GS52; ecto-apyrase GS52 precursor [KO:K14641] [EC:3.6.1.5]
100811625  apyrase 2 [KO:K14641] [EC:3.6.1.5]
100789438  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
100793652  uncharacterized protein LOC100793652 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
100800630  venom phosphodiesterase 2 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
100790864  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
100306071  uncharacterized protein LOC100306071 [KO:K26955] [EC:3.6.1.17]
100778080  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
100788720  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
100793465  CTP synthase isoform X2 [KO:K01937] [EC:6.3.4.2]
100819563  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
100805857  CTP synthase isoform X2 [KO:K01937] [EC:6.3.4.2]
100816167  CTP synthase [KO:K01937] [EC:6.3.4.2]
100799980  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
100527893  uridine kinase-like protein [KO:K00876] [EC:2.7.1.48]
100777904  uridine kinase-like protein 3 isoform X1 [KO:K00876] [EC:2.7.1.48]
100780005  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
100816209  uridine kinase-like protein 1, chloroplastic isoform X2 [KO:K00876] [EC:2.7.1.48]
100798205  uridine kinase-like protein 3 isoform X2 [KO:K00876] [EC:2.7.1.48]
100792258  uridine kinase-like protein 3 isoform X2 [KO:K00876] [EC:2.7.1.48]
100811230  inorganic pyrophosphatase TTM1 isoform X2 [KO:K00876] [EC:2.7.1.48]
100803453  uridine kinase-like protein 5 [KO:K00876] [EC:2.7.1.48]
100786137  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
100781286  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
100803122  inorganic pyrophosphatase TTM1 [KO:K00876] [EC:2.7.1.48]
100797542  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
100808698  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100814744  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100776267  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100779772  uncharacterized protein LOC100779772 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100785738  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100790833  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100792340  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
100787754  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
100787563  uridine nucleosidase 1-like [KO:K01240] [EC:3.2.2.3]
100818908  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
100804545  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
100797953  putative uracil phosphoribosyltransferase isoform 2 [KO:K00761] [EC:2.4.2.9]
100797537  uracil phosphoribosyltransferase-like protein [KO:K00761] [EC:2.4.2.9]
100795266  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
100815584  7-methylguanosine phosphate-specific 5'-nucleotidase A [KO:K24242] [EC:3.1.3.91]
100787103  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
100780880  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
100795350  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
102659836  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
100783628  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
547948  ribonucleotide reductase large subunit B [KO:K10807] [EC:1.17.4.1]
548020  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
100791639  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
547521  ribonucleotide reductase small subunit [KO:K10808] [EC:1.17.4.1]
100779885  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
100820622  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
100790224  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
100784040  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
100500294  nucleoside triphosphate pyrophosphohydrolase-like [KO:K16904] [EC:3.6.1.12]
100527076  uncharacterized protein LOC100527076 [KO:K16904] [EC:3.6.1.12]
100306684  uncharacterized protein LOC100306684 [KO:K16904] [EC:3.6.1.12]
100500214  uncharacterized protein LOC100500214 [KO:K16904] [EC:3.6.1.12]
106798062  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
100789619  5'-deoxynucleotidase hdd1 [KO:K07023] [EC:3.1.3.89]
100784513  5'-deoxynucleotidase hdd1 isoform X1 [KO:K07023] [EC:3.1.3.89]
100798792  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
100819398  5'-deoxynucleotidase HDDC2 isoform X2 [KO:K07023] [EC:3.1.3.89]
100792003  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
100778161  thymidylate kinase-like protein [KO:K00943] [EC:2.7.4.9]
100794055  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
100782126  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
100813201  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
100818437  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
100809756  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
100781341  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
547833  DHFR-TS; bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
100786311  bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
100786329  bifunctional dihydrofolate reductase-thymidylate synthase [KO:K13998] [EC:1.5.1.3 2.1.1.45]
100788658  bifunctional dihydrofolate reductase-thymidylate synthase isoform X2 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
100818990  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
100804632  uncharacterized protein LOC100804632 [KO:K00207] [EC:1.3.1.2]
100802353  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
100781590  uncharacterized protein LOC100781590 precursor [KO:K01464] [EC:3.5.2.2]
100797867  dihydropyrimidinase isoform X2 [KO:K01464] [EC:3.5.2.2]
100792563  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
Related
pathway
gmx00030  Pentose phosphate pathway
gmx00220  Arginine biosynthesis
gmx00250  Alanine, aspartate and glutamate metabolism
gmx00280  Valine, leucine and isoleucine degradation
gmx00410  beta-Alanine metabolism
KO pathway
ko00240   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (118)   
   KEGG GENES (118)   
All databases (119)   

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