KEGG   PATHWAY: hch00020
Entry
hch00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hahella chejuensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hch00020  Citrate cycle (TCA cycle)
hch00020

Module
hch_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hch00020]
hch_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hch00020]
hch_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hch00020]
hch_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hch00020]
hch_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hch00020]
Other DBs
GO: 0006099
Organism
Hahella chejuensis [GN:hch]
Gene
HCH_04750  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
HCH_02564  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
HCH_02563  hypothetical protein [KO:K01647] [EC:2.3.3.1]
HCH_06874  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
HCH_02149  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HCH_03212  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
HCH_02336  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
HCH_04745  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
HCH_04744  sucB2; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
HCH_04743  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HCH_00152  putative pyridine nucleotide-disulfide oxidoreductase, class I [KO:K00382] [EC:1.8.1.4]
HCH_00873  lpdA1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HCH_04740  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
HCH_04741  sucC; Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
HCH_04747  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HCH_04746  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
HCH_04749  sdhC; succinate dehydrogenase (C subunit) [KO:K00241]
HCH_04748  sdhD; Succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
HCH_04987  Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [KO:K01676] [EC:4.2.1.2]
HCH_00016  fumC; Fumarase [KO:K01679] [EC:4.2.1.2]
HCH_01978  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HCH_04006  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
HCH_06705  accC2; acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
HCH_06704  oadA2; oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
HCH_00561  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HCH_01272  aceE; Pyruvate dehydrogenase complex, dehydrogenase (E1) component [KO:K00163] [EC:1.2.4.1]
HCH_01273  aceF; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hch00010  Glycolysis / Gluconeogenesis
hch00053  Ascorbate and aldarate metabolism
hch00061  Fatty acid biosynthesis
hch00071  Fatty acid degradation
hch00190  Oxidative phosphorylation
hch00220  Arginine biosynthesis
hch00250  Alanine, aspartate and glutamate metabolism
hch00280  Valine, leucine and isoleucine degradation
hch00350  Tyrosine metabolism
hch00470  D-Amino acid metabolism
hch00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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