KEGG   PATHWAY: ial00020
Entry
ial00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ignavibacterium album
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ial00020  Citrate cycle (TCA cycle)
ial00020

Module
ial_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ial00020]
ial_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ial00020]
ial_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ial00020]
ial_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ial00020]
Other DBs
GO: 0006099
Organism
Ignavibacterium album [GN:ial]
Gene
IALB_2672  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
IALB_2872  acnA; Aconitase A [KO:K01681] [EC:4.2.1.3]
IALB_0043  icd; Monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IALB_0046  leuB; 3-isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IALB_1153  leuB; 3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
IALB_0519  Isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
IALB_1242  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IALB_1654  lpd; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IALB_2982  pdhD; Pyruvate dehydrogenase E3 component [KO:K00382] [EC:1.8.1.4]
IALB_1501  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IALB_0272  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IALB_1502  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IALB_0273  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IALB_0274  korG; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
IALB_0271  korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
IALB_2101  sucD; Succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
IALB_1071  sucC; Succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
IALB_2298  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IALB_2297  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IALB_2299  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
IALB_2739  fumC; Fumarase [KO:K01679] [EC:4.2.1.2]
IALB_2127  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IALB_1142  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
IALB_1079  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
IALB_2978  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
IALB_2979  aceF; Pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
IALB_1649  sucB; 2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
IALB_2949  nifJ; Pyruvate:ferredoxin oxidoreductase subunit alpha [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ial00010  Glycolysis / Gluconeogenesis
ial00061  Fatty acid biosynthesis
ial00071  Fatty acid degradation
ial00190  Oxidative phosphorylation
ial00220  Arginine biosynthesis
ial00250  Alanine, aspartate and glutamate metabolism
ial00280  Valine, leucine and isoleucine degradation
ial00350  Tyrosine metabolism
ial00470  D-Amino acid metabolism
ial00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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