PATHWAY: lch01100 Help Entry lch01100                    Pathway                                 Name Metabolic pathways - Leptothrix cholodnii Class BRITE hierarchy Pathway map lch01100   Metabolic pathways Module lch_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:lch01100] lch_M00002   Glycolysis, core module involving three-carbon compounds [PATH:lch01100] lch_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lch01100] lch_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:lch01100] lch_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lch01100] lch_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:lch01100] lch_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lch01100] lch_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lch01100] lch_M00012   Glyoxylate cycle [PATH:lch01100] lch_M00015   Proline biosynthesis, glutamate => proline [PATH:lch01100] lch_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:lch01100] lch_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:lch01100] lch_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:lch01100] lch_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:lch01100] lch_M00021   Cysteine biosynthesis, serine => cysteine [PATH:lch01100] lch_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:lch01100] lch_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:lch01100] lch_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:lch01100] lch_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:lch01100] lch_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:lch01100] lch_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:lch01100] lch_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:lch01100] lch_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lch01100] lch_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lch01100] lch_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lch01100] lch_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lch01100] lch_M00063   CMP-KDO biosynthesis [PATH:lch01100] lch_M00082   Fatty acid biosynthesis, initiation [PATH:lch01100] lch_M00083   Fatty acid biosynthesis, elongation [PATH:lch01100] lch_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:lch01100] lch_M00087   beta-Oxidation [PATH:lch01100] lch_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:lch01100] lch_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:lch01100] lch_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:lch01100] lch_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:lch01100] lch_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:lch01100] lch_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:lch01100] lch_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:lch01100] lch_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:lch01100] lch_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:lch01100] lch_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:lch01100] lch_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:lch01100] lch_M00149   Succinate dehydrogenase, prokaryotes [PATH:lch01100] lch_M00151   Cytochrome bc1 complex respiratory unit [PATH:lch01100] lch_M00155   Cytochrome c oxidase, prokaryotes [PATH:lch01100] lch_M00156   Cytochrome c oxidase, cbb3-type [PATH:lch01100] lch_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:lch01100] lch_M00165   Reductive pentose phosphate cycle (Calvin cycle) [PATH:lch01100] lch_M00168   CAM (Crassulacean acid metabolism), dark [PATH:lch01100] lch_M00175   Nitrogen fixation, nitrogen => ammonia [PATH:lch01100] lch_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lch01100] lch_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:lch01100] lch_M00529   Denitrification, nitrate => nitrogen [PATH:lch01100] lch_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:lch01100] lch_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:lch01100] lch_M00540   Benzoate degradation, cyclohexanecarboxylic acid =>pimeloyl-CoA [PATH:lch01100] lch_M00548   Benzene degradation, benzene => catechol [PATH:lch01100] lch_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:lch01100] lch_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:lch01100] lch_M00569   Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:lch01100] lch_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:lch01100] lch_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:lch01100] lch_M00595   Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:lch01100] lch_M00621   Glycine cleavage system [PATH:lch01100] lch_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:lch01100] lch_M00638   Salicylate degradation, salicylate => gentisate [PATH:lch01100] lch_M00793   dTDP-L-rhamnose biosynthesis [PATH:lch01100] lch_M00844   Arginine biosynthesis, ornithine => arginine [PATH:lch01100] lch_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:lch01100] lch_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:lch01100] lch_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:lch01100] lch_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:lch01100] lch_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:lch01100] lch_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:lch01100] lch_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:lch01100] lch_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:lch01100] lch_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:lch01100] lch_M00970   Proline degradation, proline => glutamate [PATH:lch01100] Organism Leptothrix cholodnii [GN:lch] Related pathway lch00010   Glycolysis / Gluconeogenesis lch00020   Citrate cycle (TCA cycle) lch00030   Pentose phosphate pathway lch00040   Pentose and glucuronate interconversions lch00051   Fructose and mannose metabolism lch00052   Galactose metabolism lch00053   Ascorbate and aldarate metabolism lch00061   Fatty acid biosynthesis lch00071   Fatty acid degradation lch00130   Ubiquinone and other terpenoid-quinone biosynthesis lch00190   Oxidative phosphorylation lch00220   Arginine biosynthesis lch00230   Purine metabolism lch00240   Pyrimidine metabolism lch00250   Alanine, aspartate and glutamate metabolism lch00260   Glycine, serine and threonine metabolism lch00261   Monobactam biosynthesis lch00270   Cysteine and methionine metabolism lch00280   Valine, leucine and isoleucine degradation lch00290   Valine, leucine and isoleucine biosynthesis lch00300   Lysine biosynthesis lch00310   Lysine degradation lch00330   Arginine and proline metabolism lch00332   Carbapenem biosynthesis lch00340   Histidine metabolism lch00350   Tyrosine metabolism lch00360   Phenylalanine metabolism lch00361   Chlorocyclohexane and chlorobenzene degradation lch00362   Benzoate degradation lch00364   Fluorobenzoate degradation lch00380   Tryptophan metabolism lch00400   Phenylalanine, tyrosine and tryptophan biosynthesis lch00401   Novobiocin biosynthesis lch00410   beta-Alanine metabolism lch00430   Taurine and hypotaurine metabolism lch00450   Selenocompound metabolism lch00460   Cyanoamino acid metabolism lch00470   D-Amino acid metabolism lch00480   Glutathione metabolism lch00500   Starch and sucrose metabolism lch00520   Amino sugar and nucleotide sugar metabolism lch00521   Streptomycin biosynthesis lch00523   Polyketide sugar unit biosynthesis lch00525   Acarbose and validamycin biosynthesis lch00540   Lipopolysaccharide biosynthesis lch00541   O-Antigen nucleotide sugar biosynthesis lch00543   Exopolysaccharide biosynthesis lch00550   Peptidoglycan biosynthesis lch00552   Teichoic acid biosynthesis lch00561   Glycerolipid metabolism lch00562   Inositol phosphate metabolism lch00564   Glycerophospholipid metabolism lch00592   alpha-Linolenic acid metabolism lch00600   Sphingolipid metabolism lch00620   Pyruvate metabolism lch00621   Dioxin degradation lch00622   Xylene degradation lch00623   Toluene degradation lch00624   Polycyclic aromatic hydrocarbon degradation lch00625   Chloroalkane and chloroalkene degradation lch00626   Naphthalene degradation lch00627   Aminobenzoate degradation lch00630   Glyoxylate and dicarboxylate metabolism lch00633   Nitrotoluene degradation lch00640   Propanoate metabolism lch00642   Ethylbenzene degradation lch00643   Styrene degradation lch00650   Butanoate metabolism lch00660   C5-Branched dibasic acid metabolism lch00670   One carbon pool by folate lch00680   Methane metabolism lch00730   Thiamine metabolism lch00740   Riboflavin metabolism lch00750   Vitamin B6 metabolism lch00760   Nicotinate and nicotinamide metabolism lch00770   Pantothenate and CoA biosynthesis lch00780   Biotin metabolism lch00785   Lipoic acid metabolism lch00790   Folate biosynthesis lch00791   Atrazine degradation lch00860   Porphyrin metabolism lch00900   Terpenoid backbone biosynthesis lch00906   Carotenoid biosynthesis lch00907   Pinene, camphor and geraniol degradation lch00910   Nitrogen metabolism lch00920   Sulfur metabolism lch00930   Caprolactam degradation lch00946   Degradation of flavonoids lch00999   Biosynthesis of various plant secondary metabolites lch01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100

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