KEGG   PATHWAY: lmot00020
Entry
lmot00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Listeria monocytogenes SLCC2540 (serotype 3b)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmot00020  Citrate cycle (TCA cycle)
lmot00020

Module
lmot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmot00020]
lmot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmot00020]
Other DBs
GO: 0006099
Organism
Listeria monocytogenes SLCC2540 (serotype 3b) [GN:lmot]
Gene
LMOSLCC2540_1647  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
LMOSLCC2540_1721  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LMOSLCC2540_1646  citC; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LMOSLCC2540_1055  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMOSLCC2540_1421  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMOSLCC2540_2324  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
LMOSLCC2540_1068  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LMOSLCC2540_1052  pdhA; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
LMOSLCC2540_1053  pdhB; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
LMOSLCC2540_1054  pdhC; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
LMOSLCC2540_0826  pyruvate flavodoxin/ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmot00010  Glycolysis / Gluconeogenesis
lmot00061  Fatty acid biosynthesis
lmot00071  Fatty acid degradation
lmot00190  Oxidative phosphorylation
lmot00220  Arginine biosynthesis
lmot00250  Alanine, aspartate and glutamate metabolism
lmot00280  Valine, leucine and isoleucine degradation
lmot00350  Tyrosine metabolism
lmot00470  D-Amino acid metabolism
lmot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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