KEGG   PATHWAY: lsp00020
Entry
lsp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lysinibacillus sphaericus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lsp00020  Citrate cycle (TCA cycle)
lsp00020

Module
lsp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lsp00020]
lsp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lsp00020]
lsp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lsp00020]
lsp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lsp00020]
lsp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lsp00020]
Other DBs
GO: 0006099
Organism
Lysinibacillus sphaericus [GN:lsp]
Gene
Bsph_2971  Citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
Bsph_3053  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Bsph_4121  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Bsph_2785  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Bsph_2786  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Bsph_1277  conserved hypothetical protein [KO:K00382] [EC:1.8.1.4]
Bsph_3495  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bsph_1366  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bsph_1641  korA; 2-oxoglutarate synthase subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bsph_1642  korB; 2-oxoglutarate synthase subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bsph_1538  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Bsph_1537  Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
Bsph_4325  Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
Bsph_0837  succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
Bsph_4053  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bsph_4052  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bsph_4054  Succinate dehydrogenase cytochrome b558 subunit (Cytochrome b-558) [KO:K00241]
Bsph_0300  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
Bsph_2397  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Bsph_4120  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bsph_2109  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bsph_4711  Probable malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Bsph_1392  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Bsph_4252  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Bsph_1363  Pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Bsph_1364  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Bsph_1365  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lsp00010  Glycolysis / Gluconeogenesis
lsp00053  Ascorbate and aldarate metabolism
lsp00061  Fatty acid biosynthesis
lsp00062  Fatty acid elongation
lsp00071  Fatty acid degradation
lsp00190  Oxidative phosphorylation
lsp00220  Arginine biosynthesis
lsp00250  Alanine, aspartate and glutamate metabolism
lsp00280  Valine, leucine and isoleucine degradation
lsp00350  Tyrosine metabolism
lsp00470  D-Amino acid metabolism
lsp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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