KEGG   PATHWAY: maq00020
Entry
maq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Marinobacter nauticus VT8
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
maq00020  Citrate cycle (TCA cycle)
maq00020

Module
maq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:maq00020]
maq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:maq00020]
maq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:maq00020]
maq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:maq00020]
Other DBs
GO: 0006099
Organism
Marinobacter nauticus VT8 [GN:maq]
Gene
Maqu_1149  citrate synthase [KO:K01647] [EC:2.3.3.1]
Maqu_3674  aconitase [KO:K01681] [EC:4.2.1.3]
Maqu_1859  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Maqu_0090  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Maqu_1154  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Maqu_1155  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Maqu_3487  pyridine nucleotide-disulfide oxidoreductase dimerization region [KO:K00382] [EC:1.8.1.4]
Maqu_1156  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Maqu_1158  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Maqu_1157  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Maqu_1152  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Maqu_1153  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Maqu_1150  succinate dehydrogenase subunit C [KO:K00241]
Maqu_1151  succinate dehydrogenase subunit D [KO:K00242]
Maqu_2035  fumarase [KO:K01676] [EC:4.2.1.2]
Maqu_3405  fumarase [KO:K01679] [EC:4.2.1.2]
Maqu_3398  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Maqu_0370  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Maqu_1383  Malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
Maqu_3754  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Maqu_3328  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Maqu_3327  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
maq00010  Glycolysis / Gluconeogenesis
maq00053  Ascorbate and aldarate metabolism
maq00061  Fatty acid biosynthesis
maq00071  Fatty acid degradation
maq00190  Oxidative phosphorylation
maq00220  Arginine biosynthesis
maq00250  Alanine, aspartate and glutamate metabolism
maq00280  Valine, leucine and isoleucine degradation
maq00350  Tyrosine metabolism
maq00470  D-Amino acid metabolism
maq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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