KEGG   PATHWAY: mmu04623
Entry
mmu04623                    Pathway                                
Name
Cytosolic DNA-sensing pathway - Mus musculus (house mouse)
Description
Specific families of pattern recognition receptors are responsible for detecting foreign DNA from invading microbes or host cells and generating innate immune responses. DAI is the first identified sensor of cytosolic DNA which activates the IRF and NF-{kappa}B transcription factors, leading to production of type I interferon and other cytokines. The second type of cytoplasmic DNA sensor is AIM2. Upon sensing DNA, AIM2 triggers the assembly of the inflammasome, culminating in interleukin maturation. In addition to these receptors, there is a mechanism to sense foreign DNA, with the host RNA polymerase III converting the DNA into RNA for recognition by the RNA sensor RIG-I. These pathways provide various means to alert the cell.
Class
Organismal Systems; Immune system
Pathway map
mmu04623  Cytosolic DNA-sensing pathway
mmu04623

Organism
Mus musculus (house mouse) [GN:mmu]
Gene
218832  Polr3a; polymerase (RNA) III (DNA directed) polypeptide A [KO:K03018] [EC:2.7.7.6]
70428  Polr3b; polymerase (RNA) III (DNA directed) polypeptide B [KO:K03021] [EC:2.7.7.6]
74414  Polr3c; polymerase (RNA) III (DNA directed) polypeptide C [KO:K03023]
67065  Polr3d; polymerase (RNA) III (DNA directed) polypeptide D [KO:K03026]
26939  Polr3e; polymerase (RNA) III (DNA directed) polypeptide E [KO:K14721]
20016  Polr1c; polymerase (RNA) I polypeptide C [KO:K03027]
67005  Polr3k; polymerase (RNA) III (DNA directed) polypeptide K [KO:K03019]
20018  Polr1d; polymerase (RNA) I polypeptide D [KO:K03020]
78929  Polr3h; polymerase (RNA) III (DNA directed) polypeptide H [KO:K03022]
67486  Polr3g; polymerase (RNA) III (DNA directed) polypeptide G [KO:K03024]
69870  Polr3gl; polymerase (RNA) III (DNA directed) polypeptide G like [KO:K03024]
70408  Polr3f; polymerase (RNA) III (DNA directed) polypeptide F [KO:K03025]
66420  Polr2e; polymerase (RNA) II (DNA directed) polypeptide E [KO:K03013]
69833  Polr2f; polymerase (RNA) II (DNA directed) polypeptide F [KO:K03014]
245841  Polr2h; polymerase (RNA) II (DNA directed) polypeptide H [KO:K03016]
17749  Polr2k; polymerase (RNA) II (DNA directed) polypeptide K [KO:K03009]
66491  Polr2l; polymerase (RNA) II (DNA directed) polypeptide L [KO:K03007]
230073  Rigi; RNA sensor RIG-I [KO:K12646] [EC:5.6.2.6]
228607  Mavs; mitochondrial antiviral signaling protein [KO:K12648]
18033  Nfkb1; nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 [KO:K02580]
19697  Rela; v-rel reticuloendotheliosis viral oncogene homolog A (avian) [KO:K04735]
16193  Il6; interleukin 6 [KO:K05405]
23983  Pcbp1; poly(rC) binding protein 1 [KO:K12889]
27041  G3bp1; G3BP stress granule assembly factor 1 [KO:K17265] [EC:5.6.2.5 5.6.2.3]
67917  Zcchc3; zinc finger, CCHC domain containing 3 [KO:K27162]
214763  Cgas; cyclic GMP-AMP synthase [KO:K17834] [EC:2.7.7.86]
72512  Sting1; stimulator of interferon response cGAMP interactor 1 [KO:K12654]
70796  Zdhhc1; zinc finger, DHHC domain containing 1 [KO:K20027] [EC:2.3.1.225]
71164  Zdhhc11; zinc finger, DHHC domain containing 11 [KO:K20027] [EC:2.3.1.225]
72935  Ddx41; DEAD box helicase 41 [KO:K13116] [EC:5.6.2.7]
15951  Ifi204; interferon activated gene 204 [KO:K20914]
56480  Tbk1; TANK-binding kinase 1 [KO:K05410] [EC:2.7.11.10]
56489  Ikbke; inhibitor of kappaB kinase epsilon [KO:K07211] [EC:2.7.11.10]
54131  Irf3; interferon regulatory factor 3 [KO:K05411]
54123  Irf7; interferon regulatory factor 7 [KO:K09447]
15962  Ifna1; interferon alpha 1 [KO:K05414]
15965  Ifna2; interferon alpha 2 [KO:K05414]
15967  Ifna4; interferon alpha 4 [KO:K05414]
15968  Ifna5; interferon alpha 5 [KO:K05414]
15969  Ifna6; interferon alpha 6 [KO:K05414]
15970  Ifna7; interferon alpha 7 [KO:K05414]
15972  Ifna9; interferon alpha 9 [KO:K05414]
15964  Ifna11; interferon alpha 11 [KO:K05414]
242519  Ifna12; interferon alpha 12 [KO:K05414]
230396  Ifna13; interferon alpha 13 [KO:K05414]
404549  Ifna14; interferon alpha 14 [KO:K05414]
15974  Ifnab; interferon alpha B [KO:K05414]
242517  Ifna15; interferon alpha 15 [KO:K05414]
230398  Ifna16; interferon alpha 16 [KO:K05414]
15977  Ifnb1; interferon beta 1, fibroblast [KO:K05415]
58203  Zbp1; Z-DNA binding protein 1 [KO:K12965]
19766  Ripk1; receptor (TNFRSF)-interacting serine-threonine kinase 1 [KO:K02861] [EC:2.7.11.1]
56532  Ripk3; receptor-interacting serine-threonine kinase 3 [KO:K08847] [EC:2.7.11.1]
16151  Ikbkg; inhibitor of kappaB kinase gamma [KO:K07210]
12675  Chuk; conserved helix-loop-helix ubiquitous kinase [KO:K04467] [EC:2.7.11.10]
16150  Ikbkb; inhibitor of kappaB kinase beta [KO:K07209] [EC:2.7.11.10]
18036  Nfkbib; nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta [KO:K02581]
18035  Nfkbia; nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha [KO:K04734]
20303  Ccl4; C-C motif chemokine ligand 4 [KO:K12964]
20304  Ccl5; C-C motif chemokine ligand 5 [KO:K12499]
15945  Cxcl10; C-X-C motif chemokine ligand 10 [KO:K12671]
383619  Aim2; absent in melanoma 2 [KO:K12966]
216799  Nlrp3; NLR family, pyrin domain containing 3 [KO:K12800]
54483  Mefv; Mediterranean fever [KO:K12803]
14082  Fadd; Fas associated via death domain [KO:K02373]
12370  Casp8; caspase 8 [KO:K04398] [EC:3.4.22.61]
66824  Pycard; PYD and CARD domain containing [KO:K12799]
12362  Casp1; caspase 1 [KO:K01370] [EC:3.4.22.36]
74568  Mlkl; mixed lineage kinase domain-like [KO:K08849] [EC:2.7.11.1]
12367  Casp3; caspase 3 [KO:K02187] [EC:3.4.22.56]
12369  Casp7; caspase 7 [KO:K04397] [EC:3.4.22.60]
54722  Gsdme; gasdermin E [KO:K22146]
69146  Gsdmd; gasdermin D [KO:K20917]
16176  Il1b; interleukin 1 beta [KO:K04519]
16173  Il18; interleukin 18 [KO:K05482]
77125  Il33; interleukin 33 [KO:K12967]
56417  Adar; adenosine deaminase, RNA-specific [KO:K12968] [EC:3.5.4.37]
56045  Samhd1; SAM domain and HD domain, 1 [KO:K22544] [EC:3.1.5.-]
22040  Trex1; three prime repair exonuclease 1 [KO:K10790] [EC:3.1.11.2]
13423  Dnase2a; deoxyribonuclease II alpha [KO:K01158] [EC:3.1.22.1]
56629  Dnase2b; deoxyribonuclease II beta [KO:K01158] [EC:3.1.22.1]
26388  Ifi202b; interferon activated gene 202B [KO:K12971]
Compound
C00039  DNA
C20640  Cyclic GMP-AMP
Reference
PMID:19362700
  Authors
Yanai H, Savitsky D, Tamura T, Taniguchi T
  Title
Regulation of the cytosolic DNA-sensing system in innate immunity: a current view.
  Journal
Curr Opin Immunol 21:17-22 (2009)
DOI:10.1016/j.coi.2009.01.005
Reference
PMID:19497760
  Authors
Vilaysane A, Muruve DA
  Title
The innate immune response to DNA.
  Journal
Semin Immunol 21:208-14 (2009)
DOI:10.1016/j.smim.2009.05.006
Reference
PMID:18573338
  Authors
Takeshita F, Ishii KJ
  Title
Intracellular DNA sensors in immunity.
  Journal
Curr Opin Immunol 20:383-8 (2008)
DOI:10.1016/j.coi.2008.05.009
Reference
PMID:19122387
  Authors
Takaoka A, Shinohara S
  Title
DNA sensors in innate immune system.
  Journal
Uirusu 58:37-46 (2008)
DOI:10.2222/jsv.58.37
Reference
PMID:18280611
  Authors
Takaoka A, Taniguchi T
  Title
Cytosolic DNA recognition for triggering innate immune responses.
  Journal
Adv Drug Deliv Rev 60:847-57 (2008)
DOI:10.1016/j.addr.2007.12.002
Reference
PMID:18941233
  Authors
Kaiser WJ, Upton JW, Mocarski ES
  Title
Receptor-interacting protein homotypic interaction motif-dependent control of NF-kappa B activation via the DNA-dependent activator of IFN regulatory factors.
  Journal
J Immunol 181:6427-34 (2008)
DOI:10.4049/jimmunol.181.9.6427
Reference
PMID:19590578
  Authors
Rebsamen M, Heinz LX, Meylan E, Michallet MC, Schroder K, Hofmann K, Vazquez J, Benedict CA, Tschopp J
  Title
DAI/ZBP1 recruits RIP1 and RIP3 through RIP homotypic interaction motifs to activate NF-kappaB.
  Journal
EMBO Rep 10:916-22 (2009)
DOI:10.1038/embor.2009.109
Reference
PMID:18375758
  Authors
Wang Z, Choi MK, Ban T, Yanai H, Negishi H, Lu Y, Tamura T, Takaoka A, Nishikura K, Taniguchi T
  Title
Regulation of innate immune responses by DAI (DLM-1/ZBP1) and other DNA-sensing molecules.
  Journal
Proc Natl Acad Sci U S A 105:5477-82 (2008)
DOI:10.1073/pnas.0801295105
Reference
PMID:18724932
  Authors
Stetson DB, Ko JS, Heidmann T, Medzhitov R
  Title
Trex1 prevents cell-intrinsic initiation of autoimmunity.
  Journal
Cell 134:587-98 (2008)
DOI:10.1016/j.cell.2008.06.032
Reference
PMID:19321146
  Authors
Schroder K, Muruve DA, Tschopp J
  Title
Innate immunity: cytoplasmic DNA sensing by the AIM2 inflammasome.
  Journal
Curr Biol 19:R262-5 (2009)
DOI:10.1016/j.cub.2009.02.011
Reference
PMID:19567913
  Authors
Krieg AM
  Title
AIMing 2 detect foreign DNA.
  Journal
Sci Signal 2:pe39 (2009)
DOI:10.1126/scisignal.277pe39
Reference
PMID:19665965
  Authors
O'Neill LA
  Title
DNA makes RNA makes innate immunity.
  Journal
Cell 138:428-30 (2009)
DOI:10.1016/j.cell.2009.07.021
Reference
PMID:16286919
  Authors
Ishii KJ, Coban C, Kato H, Takahashi K, Torii Y, Takeshita F, Ludwig H, Sutter G, Suzuki K, Hemmi H, Sato S, Yamamoto M, Uematsu S, Kawai T, Takeuchi O, Akira S
  Title
A Toll-like receptor-independent antiviral response induced by double-stranded B-form DNA.
  Journal
Nat Immunol 7:40-8 (2006)
DOI:10.1038/ni1282
Reference
PMID:19767723
  Authors
Cao X
  Title
New DNA-sensing pathway feeds RIG-I with RNA.
  Journal
Nat Immunol 10:1049-51 (2009)
DOI:10.1038/ni1009-1049
Reference
PMID:23258413
  Authors
Sun L, Wu J, Du F, Chen X, Chen ZJ
  Title
Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.
  Journal
Science 339:786-91 (2013)
DOI:10.1126/science.1232458
Reference
PMID:35006429
  Authors
Gao M, He Y, Tang H, Chen X, Liu S, Tao Y
  Title
cGAS/STING: novel perspectives of the classic pathway.
  Journal
Mol Biomed 1:7 (2020)
DOI:10.1186/s43556-020-00006-z
Reference
PMID:34949589
  Authors
Benjamin P, Sudhakar S, D'Arco F, Lobel U, Carney O, Roux CJ, Boddaert N, Hemingway C, Eleftheriou D, Mankad K
  Title
Spectrum of Neuroradiologic Findings Associated with Monogenic Interferonopathies.
  Journal
AJNR Am J Neuroradiol 43:2-10 (2022)
DOI:10.3174/ajnr.A7362
Reference
PMID:32829024
  Authors
Place DE, Lee S, Kanneganti TD
  Title
PANoptosis in microbial infection.
  Journal
Curr Opin Microbiol 59:42-49 (2021)
DOI:10.1016/j.mib.2020.07.012
Reference
PMID:34970269
  Authors
Jiang W, Deng Z, Dai X, Zhao W
  Title
PANoptosis: A New Insight Into Oral Infectious Diseases.
  Journal
Front Immunol 12:789610 (2021)
DOI:10.3389/fimmu.2021.789610
Reference
PMID:34504660
  Authors
Wang Y, Kanneganti TD
  Title
From pyroptosis, apoptosis and necroptosis to PANoptosis: A mechanistic compendium of programmed cell death pathways.
  Journal
Comput Struct Biotechnol J 19:4641-4657 (2021)
DOI:10.1016/j.csbj.2021.07.038
Related
pathway
mmu04064  NF-kappa B signaling pathway
mmu04120  Ubiquitin mediated proteolysis
mmu04210  Apoptosis
mmu04217  Necroptosis
mmu04621  NOD-like receptor signaling pathway
mmu04622  RIG-I-like receptor signaling pathway
KO pathway
ko04623   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (82)   
   KEGG GENES (82)   
All databases (83)   

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