KEGG   PATHWAY: ndi00030
Entry
ndi00030                    Pathway                                
Name
Pentose phosphate pathway - Naumovozyma dairenensis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ndi00030  Pentose phosphate pathway
ndi00030

Module
ndi_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ndi00030]
ndi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ndi00030]
ndi_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ndi00030]
ndi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ndi00030]
Other DBs
GO: 0006098
Organism
Naumovozyma dairenensis [GN:ndi]
Gene
NDAI_0C05500  NDAI0C05500; hypothetical protein [KO:K01810] [EC:5.3.1.9]
NDAI_0F03920  NDAI0F03920; hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NDAI_0H04010  NDAI0H04010; hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NDAI_0K02980  NDAI0K02980; hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NDAI_0B00950  NDAI0B00950; hypothetical protein [KO:K01057] [EC:3.1.1.31]
NDAI_0K02250  NDAI0K02250; hypothetical protein [KO:K01057] [EC:3.1.1.31]
NDAI_0C03310  NDAI0C03310; hypothetical protein [KO:K01057] [EC:3.1.1.31]
NDAI_0C03490  NDAI0C03490; hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
NDAI_0G06080  NDAI0G06080; hypothetical protein [KO:K01783] [EC:5.1.3.1]
NDAI_0A07980  NDAI0A07980; hypothetical protein [KO:K00615] [EC:2.2.1.1]
NDAI_0A05060  NDAI0A05060; hypothetical protein [KO:K00615] [EC:2.2.1.1]
NDAI_0D04080  NDAI0D04080; hypothetical protein [KO:K00616] [EC:2.2.1.2]
NDAI_0J01880  NDAI0J01880; hypothetical protein [KO:K00616] [EC:2.2.1.2]
NDAI_0B04120  NDAI0B04120; hypothetical protein [KO:K01807] [EC:5.3.1.6]
NDAI_0A00710  NDAI0A00710; hypothetical protein [KO:K00852] [EC:2.7.1.15]
NDAI_0E02080  NDAI0E02080; hypothetical protein [KO:K01835] [EC:5.4.2.2]
NDAI_0H02350  NDAI0H02350; hypothetical protein [KO:K01835] [EC:5.4.2.2]
NDAI_0K00410  NDAI0K00410; hypothetical protein [KO:K01835] [EC:5.4.2.2]
NDAI_0C02220  NDAI0C02220; hypothetical protein [KO:K01835] [EC:5.4.2.2]
NDAI_0D04260  NDAI0D04260; hypothetical protein [KO:K00948] [EC:2.7.6.1]
NDAI_0A01660  NDAI0A01660; hypothetical protein [KO:K00948] [EC:2.7.6.1]
NDAI_0K01830  NDAI0K01830; hypothetical protein [KO:K00948] [EC:2.7.6.1]
NDAI_0G02930  NDAI0G02930; hypothetical protein [KO:K00948] [EC:2.7.6.1]
NDAI_0C05170  NDAI0C05170; hypothetical protein [KO:K00851] [EC:2.7.1.12]
NDAI_0C00650  NDAI0C00650; hypothetical protein [KO:K01624] [EC:4.1.2.13]
NDAI_0J02100  NDAI0J02100; hypothetical protein [KO:K03841] [EC:3.1.3.11]
NDAI_0D02620  NDAI0D02620; hypothetical protein [KO:K00850] [EC:2.7.1.11]
NDAI_0I00590  NDAI0I00590; hypothetical protein [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ndi00010  Glycolysis / Gluconeogenesis
ndi00040  Pentose and glucuronate interconversions
ndi00052  Galactose metabolism
ndi00230  Purine metabolism
ndi00240  Pyrimidine metabolism
ndi00340  Histidine metabolism
ndi00630  Glyoxylate and dicarboxylate metabolism
ndi00750  Vitamin B6 metabolism
KO pathway
ko00030   

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