KEGG   PATHWAY: nmq00020
Entry
nmq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria meningitidis M04-240196 (serogroup B)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nmq00020  Citrate cycle (TCA cycle)
nmq00020

Module
nmq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nmq00020]
nmq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nmq00020]
nmq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nmq00020]
nmq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nmq00020]
Other DBs
GO: 0006099
Organism
Neisseria meningitidis M04-240196 (serogroup B) [GN:nmq]
Gene
NMBM04240196_1208  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
NMBM04240196_0657  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NMBM04240196_1240  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
NMBM04240196_1207  sucA; oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
NMBM04240196_1206  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase succinyl-transferring complex [KO:K00658] [EC:2.3.1.61]
NMBM04240196_0863  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NMBM04240196_1205  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NMBM04240196_1214  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [KO:K00382] [EC:1.8.1.4]
NMBM04240196_1202  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
NMBM04240196_1203  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
NMBM04240196_1211  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMBM04240196_1210  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NMBM04240196_1213  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NMBM04240196_1212  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NMBM04240196_0612  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
NMBM04240196_0758  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NMBM04240196_2039  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
NMBM04240196_0865  aceE; pyruvate dehydrogenase, homodimeric type [KO:K00163] [EC:1.2.4.1]
NMBM04240196_0864  aceF; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nmq00010  Glycolysis / Gluconeogenesis
nmq00061  Fatty acid biosynthesis
nmq00071  Fatty acid degradation
nmq00190  Oxidative phosphorylation
nmq00220  Arginine biosynthesis
nmq00250  Alanine, aspartate and glutamate metabolism
nmq00280  Valine, leucine and isoleucine degradation
nmq00350  Tyrosine metabolism
nmq00470  D-Amino acid metabolism
nmq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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