KEGG   PATHWAY: oco00970
Entry
oco00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Afipia carboxidovorans OM4
Class
Genetic Information Processing; Translation
Pathway map
oco00970  Aminoacyl-tRNA biosynthesis
oco00970

Organism
Afipia carboxidovorans OM4 [GN:oco]
Gene
OCA4_c00680  trnA1; tRNA-Ala [KO:K14218]
OCA4_c02120  trnA2; tRNA-Ala [KO:K14218]
OCA4_c31170  trnA3; tRNA-Ala [KO:K14218]
OCA4_c04560  trnR3; tRNA-Arg [KO:K14219]
OCA4_c03680  trnR2; tRNA-Arg [KO:K14219]
OCA4_c03590  trnR1; tRNA-Arg [KO:K14219]
OCA4_c06120  trnR4; tRNA-Arg [KO:K14219]
OCA4_c19790  trnR5; tRNA-Arg [KO:K14219]
OCA4_c22860  trnR6; tRNA-Arg [KO:K14219]
OCA4_c19450  trnN; tRNA-Asn [KO:K14220]
OCA4_c21010  trnD; tRNA-Asp [KO:K14221]
OCA4_c19460  trnC; tRNA-Cys [KO:K14222]
OCA4_c12310  trnQ1; tRNA-Gln [KO:K14223]
OCA4_c15630  trnQ2; tRNA-Gln [KO:K14223]
OCA4_c09580  trnE1; tRNA-Glu [KO:K14224]
OCA4_c19980  trnE2; tRNA-Glu [KO:K14224]
OCA4_c32330  trnG3; tRNA-Gly [KO:K14225]
OCA4_c23600  trnG2; tRNA-Gly [KO:K14225]
OCA4_c01830  trnG1; tRNA-Gly [KO:K14225]
OCA4_c28420  trnH; tRNA-His [KO:K14226]
OCA4_c31180  trnI; tRNA-Ile [KO:K14227]
OCA4_c00830  trnL1; tRNA-Leu [KO:K14228]
OCA4_c22640  trnL4; tRNA-Leu [KO:K14228]
OCA4_c07740  trnL2; tRNA-Leu [KO:K14228]
OCA4_c21120  trnL3; tRNA-Leu [KO:K14228]
OCA4_c24800  trnL5; tRNA-Leu [KO:K14228]
OCA4_c18070  trnK1; tRNA-Lys [KO:K14229]
OCA4_c26730  trnK2; tRNA-Lys [KO:K14229]
OCA4_c09950  trnM1; tRNA-Met [KO:K14230]
OCA4_c31110  trnM3; tRNA-Met [KO:K14230]
OCA4_c27620  trnM2; tRNA-Met [KO:K14230]
OCA4_c31640  trnF; tRNA-Phe [KO:K14231]
OCA4_c21370  trnP3; tRNA-Pro [KO:K14232]
OCA4_c11590  trnP1; tRNA-Pro [KO:K14232]
OCA4_c19910  trnP2; tRNA-Pro [KO:K14232]
OCA4_c21890  trnS2; tRNA-Ser [KO:K14233]
OCA4_c18970  trnS1; tRNA-Ser [KO:K14233]
OCA4_c32770  trnS3; tRNA-Ser [KO:K14233]
OCA4_c33270  trnS4; tRNA-Ser [KO:K14233]
OCA4_c23650  trnT2; tRNA-Thr [KO:K14234]
OCA4_c02020  trnT1; tRNA-Thr [KO:K14234]
OCA4_c31720  trnT3; tRNA-Thr [KO:K14234]
OCA4_c23480  trnW; tRNA-Trp [KO:K14235]
OCA4_c23590  trnY; tRNA-Tyr [KO:K14236]
OCA4_c09780  trnV1; tRNA-Val [KO:K14237]
OCA4_c21070  trnV2; tRNA-Val [KO:K14237]
OCA4_c29530  trnV3; tRNA-Val [KO:K14237]
OCA4_c28030  trnU; tRNA-Sec [KO:K14238]
OCA4_c20510  gltX; glutamine-tRNA ligase GltX [KO:K01885] [EC:6.1.1.17]
OCA4_c06630  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
OCA4_c06200  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
OCA4_c22140  gatA; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
OCA4_c22100  gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [KO:K02434] [EC:6.3.5.6 6.3.5.7]
OCA4_c22160  gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [KO:K02435] [EC:6.3.5.6 6.3.5.7]
OCA4_c20500  glnS; glutamine-tRNA ligase GlnS [KO:K01886] [EC:6.1.1.18]
OCA4_c25470  alaS; alanine-tRNA ligase AlaS [KO:K01872] [EC:6.1.1.7]
OCA4_c17050  aspS; aspartate-tRNA ligase AspS [KO:K01876] [EC:6.1.1.12]
OCA4_c11340  glyQ; glycine-tRNA ligase alpha subunit GlyQ [KO:K01878] [EC:6.1.1.14]
OCA4_c11360  glyS; glycine-tRNA ligase beta subunit GlyS [KO:K01879] [EC:6.1.1.14]
OCA4_c23840  thrS; threonine-tRNA ligase ThrS [KO:K01868] [EC:6.1.1.3]
OCA4_c17680  serS; serine-tRNA ligase SerS [KO:K01875] [EC:6.1.1.11]
OCA4_c28050  selA; L-seryl-tRNA selenium transferase SelA [KO:K01042] [EC:2.9.1.1]
OCA4_c15400  cysS; cysteine-tRNA ligase CysS [KO:K01883] [EC:6.1.1.16]
OCA4_c19030  metG; methionine-tRNA ligase MetG [KO:K01874] [EC:6.1.1.10]
OCA4_c06000  fmt; methionyl-tRNA formyltransferase Fmt [KO:K00604] [EC:2.1.2.9]
OCA4_c09520  putative formyltransferase [KO:K00604] [EC:2.1.2.9]
OCA4_c19390  valS; valine-tRNA ligase ValS [KO:K01873] [EC:6.1.1.9]
OCA4_c01660  leuS; leucin-tRNA ligase LeuS [KO:K01869] [EC:6.1.1.4]
OCA4_c08790  ileS; isoleucin-tRNA ligase IleS [KO:K01870] [EC:6.1.1.5]
OCA4_c32280  lysine-tRNA ligase [KO:K04566] [EC:6.1.1.6]
OCA4_c17590  argS; arginine-tRNA ligase ArgS [KO:K01887] [EC:6.1.1.19]
OCA4_c20740  proS; proline-tRNA ligase ProS [KO:K01881] [EC:6.1.1.15]
OCA4_c08900  hisS; histidin-tRNA ligase HisS [KO:K01892] [EC:6.1.1.21]
OCA4_c00920  pheS; phenylalanine-tRNA ligase alpha chain PheS [KO:K01889] [EC:6.1.1.20]
OCA4_c00930  pheT; phenylalanine-tRNA ligase beta chain PheT [KO:K01890] [EC:6.1.1.20]
OCA4_c20290  tyrS; tyrosine-tRNA ligase TyrS [KO:K01866] [EC:6.1.1.1]
OCA4_c00110  trpS; tryptophan-tRNA ligase TrpS [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
oco00250  Alanine, aspartate and glutamate metabolism
oco00260  Glycine, serine and threonine metabolism
oco00270  Cysteine and methionine metabolism
oco00290  Valine, leucine and isoleucine biosynthesis
oco00300  Lysine biosynthesis
oco00330  Arginine and proline metabolism
oco00340  Histidine metabolism
oco00380  Tryptophan metabolism
oco00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (77)   
   KEGG GENES (77)   
All databases (78)   

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